Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52162 | Canola | nucleus | 98.27 | 98.27 |
| Bra037154.1-P | Field mustard | nucleus | 74.46 | 76.44 |
| Bra012093.1-P | Field mustard | nucleus | 72.29 | 74.55 |
| AT5G66700.1 | Thale cress | nucleus | 70.13 | 71.05 |
| Solyc02g062960.2.1 | Tomato | nucleus | 42.42 | 47.8 |
| Solyc02g085630.2.1 | Tomato | nucleus | 43.29 | 47.17 |
| Solyc03g034120.2.1 | Tomato | nucleus | 41.99 | 47.09 |
| PGSC0003DMT400033036 | Potato | nucleus | 42.86 | 46.26 |
| PGSC0003DMT400011464 | Potato | nucleus | 41.56 | 45.93 |
| KRH76853 | Soybean | nucleus | 42.42 | 45.79 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 41.56 | 45.5 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 29.87 | 45.39 |
| PGSC0003DMT400045855 | Potato | nucleus | 41.56 | 45.07 |
| PGSC0003DMT400045834 | Potato | nucleus | 41.13 | 45.02 |
| Bra017780.1-P | Field mustard | nucleus | 41.99 | 44.7 |
| KRH28621 | Soybean | nucleus | 41.56 | 44.65 |
| Solyc03g034110.2.1 | Tomato | nucleus | 41.13 | 44.6 |
| Bra040941.1-P | Field mustard | nucleus | 41.99 | 43.69 |
| Solyc03g034130.2.1 | Tomato | nucleus | 41.99 | 43.3 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 32.47 | 41.21 |
| Solyc03g034150.1.1 | Tomato | nucleus | 35.5 | 40.59 |
| Bra028099.1-P | Field mustard | nucleus | 38.1 | 40.0 |
| PGSC0003DMT400045832 | Potato | nucleus | 39.83 | 39.66 |
| KRH69950 | Soybean | nucleus | 36.36 | 39.62 |
| PGSC0003DMT400050373 | Potato | nucleus | 28.14 | 39.39 |
| Bra010573.1-P | Field mustard | nucleus | 30.3 | 38.67 |
| Zm00001d006687_P001 | Maize | nucleus | 34.2 | 35.59 |
| EER97443 | Sorghum | nucleus | 35.5 | 35.5 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 32.03 | 35.41 |
| Zm00001d021934_P001 | Maize | nucleus | 35.5 | 35.04 |
| HORVU2Hr1G092300.1 | Barley | nucleus | 20.35 | 34.81 |
| HORVU2Hr1G036680.2 | Barley | nucleus | 35.5 | 34.75 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 29.87 | 34.33 |
| Os03t0198600-01 | Rice | nucleus | 35.5 | 34.31 |
| TraesCS2D01G199200.1 | Wheat | nucleus | 35.06 | 34.03 |
| Os07t0581700-01 | Rice | nucleus | 35.06 | 33.75 |
| TraesCS2B01G218800.1 | Wheat | nucleus | 34.63 | 33.61 |
| TraesCS2B01G405700.1 | Wheat | nucleus | 32.03 | 33.48 |
| TraesCS2A01G188500.1 | Wheat | nucleus | 33.77 | 32.77 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 32.47 | 32.75 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 32.03 | 31.76 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 32.03 | 31.62 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 31.6 | 31.6 |
| TraesCS2D01G385500.1 | Wheat | nucleus | 33.77 | 31.58 |
| EER92693 | Sorghum | nucleus | 32.9 | 31.41 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 32.47 | 31.38 |
| Zm00001d048172_P001 | Maize | nucleus | 31.6 | 31.2 |
| TraesCSU01G009800.1 | Wheat | nucleus | 32.9 | 31.15 |
| Bra024665.1-P | Field mustard | nucleus | 24.68 | 30.65 |
| HORVU2Hr1G092290.6 | Barley | nucleus | 29.87 | 29.61 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 35.06 | 27.65 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EnsemblPlantsGene:Bra031819 | EnsemblPlants:Bra031819.1 | EnsemblPlants:Bra031819.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M4ESN9 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF281 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002546CAA |
| SEG:seg | : | : | : | : | : |
Description
AT5G66700 (E=1e-077) HB53, HB-8, ATHB53 | HB53; DNA binding / transcription factor
Coordinates
chrA02:-:27739510..27740532
Molecular Weight (calculated)
26778.3 Da
IEP (calculated)
4.943
GRAVY (calculated)
-0.846
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQTVLSSQV YPYTIQTQSE CIIVNQIDGS SSGDGSKPVK RRRKRRSKGS SSATNEDDVR AMERMFRKRK LTDEQVIMLE YSFENEHKLE SGRKEKIAGE
101: LGLDPRQVAV WFQNRRARWK NKKLEEEYAK LKSQHDSDVL GQCQLESQVI KLTEQLSEAQ NEIRKLSELV VVQETSTNSS SSSFSIEAND APTDFEFSPM
201: DTINDNIPLY MLDNNYYLQN MEYWDGLYVQ F
101: LGLDPRQVAV WFQNRRARWK NKKLEEEYAK LKSQHDSDVL GQCQLESQVI KLTEQLSEAQ NEIRKLSELV VVQETSTNSS SSSFSIEAND APTDFEFSPM
201: DTINDNIPLY MLDNNYYLQN MEYWDGLYVQ F
001: MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
101: IAGELGLDPR QVAVWFQNRR ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN SSSSSLSVEA NNAPTDFELA
201: PETNYNIPFY MLDNNYLQSM EYWDGLYV
Arabidopsis Description
ATHB-53Homeobox-leucine zipper protein ATHB-53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.