CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28621	Soybean	nucleus	85.51	85.12
KRH69950	Soybean	nucleus	61.68	62.26
Solyc02g085630.2.1	Tomato	nucleus	60.28	60.85
PGSC0003DMT400011464	Potato	nucleus	57.48	58.85
VIT_04s0023g01330.t01	Wine grape	nucleus	57.94	58.77
Solyc02g062960.2.1	Tomato	nucleus	56.07	58.54
PGSC0003DMT400033036	Potato	nucleus	57.48	57.48
CDX72601	Canola	nucleus	56.54	55.76
Bra017780.1-P	Field mustard	nucleus	55.61	54.84
CDX75593	Canola	nucleus	55.61	54.84
Solyc03g034120.2.1	Tomato	nucleus	52.34	54.37
AT4G36740.2	Thale cress	nucleus	54.21	53.46
CDX69241	Canola	nucleus	53.74	53.0
CDY68376	Canola	nucleus	54.67	52.7
CDY30312	Canola	nucleus	54.67	52.47
Bra040941.1-P	Field mustard	nucleus	54.21	52.25
CDY35477	Canola	nucleus	53.27	51.82
PGSC0003DMT400045834	Potato	nucleus	50.93	51.66
CDY67008	Canola	nucleus	39.72	51.52
CDY24769	Canola	nucleus	52.8	51.36
AT2G18550.1	Thale cress	nucleus	52.34	50.91
PGSC0003DMT400045855	Potato	nucleus	50.47	50.7
Solyc03g034130.2.1	Tomato	nucleus	51.87	49.55
Solyc03g034110.2.1	Tomato	nucleus	49.07	49.3
Bra028099.1-P	Field mustard	nucleus	50.47	49.09
Bra010573.1-P	Field mustard	nucleus	41.12	48.62
PGSC0003DMT400050373	Potato	nucleus	36.92	47.88
PGSC0003DMT400045832	Potato	nucleus	50.47	46.55
Solyc03g034150.1.1	Tomato	nucleus	42.99	45.54
CDX81374	Canola	nucleus	47.2	45.09
GSMUA_Achr1P22640_001	Banana	nucleus	38.32	45.05
CDY57132	Canola	nucleus	47.2	44.89
Bra037154.1-P	Field mustard	nucleus	47.2	44.89
GSMUA_Achr7P25990_001	Banana	nucleus	31.78	44.74
AT5G66700.1	Thale cress	nucleus	47.66	44.74
CDY70377	Canola	nucleus	46.26	44.2
Bra012093.1-P	Field mustard	nucleus	46.26	44.2
CDY30761	Canola	nucleus	44.86	42.86
Bra031819.1-P	Field mustard	nucleus	45.79	42.42
CDY52162	Canola	nucleus	45.79	42.42
GSMUA_Achr8P31170_001	Banana	nucleus	40.19	41.15
GSMUA_Achr4P07170_001	Banana	nucleus	37.38	39.8
Os07t0581700-01	Rice	nucleus	42.99	38.33
HORVU2Hr1G092300.1	Barley	nucleus	23.36	37.04
HORVU2Hr1G036680.2	Barley	nucleus	40.65	36.86
EER97443	Sorghum	nucleus	39.72	36.8
Zm00001d021934_P001	Maize	nucleus	39.72	36.32
TraesCS2D01G199200.1	Wheat	nucleus	40.19	36.13
Zm00001d006687_P001	Maize	nucleus	37.38	36.04
TraesCS4A01G040600.1	Wheat	nucleus	38.78	35.93
HORVU4Hr1G070610.1	Barley	nucleus	38.32	35.81
Zm00001d028129_P002	Maize	nucleus, plastid	39.72	35.56
TraesCS2A01G188500.1	Wheat	nucleus	39.25	35.29
TraesCS2B01G218800.1	Wheat	nucleus	39.25	35.29
TraesCS2B01G405700.1	Wheat	nucleus	36.45	35.29
TraesCS4B01G261600.1	Wheat	nucleus	37.85	34.76
Os03t0198600-01	Rice	nucleus	38.78	34.73
TraesCS4D01G261600.1	Wheat	nucleus	37.38	34.19
EER92693	Sorghum	nucleus	37.85	33.47
Zm00001d048172_P001	Maize	nucleus	36.45	33.33
HORVU2Hr1G092290.6	Barley	nucleus	35.05	32.19
TraesCS2D01G385500.1	Wheat	nucleus	36.92	31.98
TraesCSU01G009800.1	Wheat	nucleus	36.45	31.97
GSMUA_Achr4P14070_001	Banana	plastid	42.52	31.06

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809616	MapMan:15.5.3.1	UniProt:A0A0K2CTJ3	EMBL:ACUP02000644	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G177500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1J8X8	InterPro:IPR001356	EnsemblPlants:KRH76853	ProteinID:KRH76853
ProteinID:KRH76853.1	EMBL:KT031162	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002336DC9	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:51388090..51390457

Molecular Weight (calculated)

25075.6 Da

IEP (calculated)

6.694

GRAVY (calculated)

-1.035

Length

214 amino acids

Sequence
(BLAST)

001: MNHRQPFQDH MMLMSQLLPA DAYTQIIAQQ GDTKKPRRRR NKKNKGGENA ASEANKKRKL SDDQVNLLEQ NFGNEHKLES ERKDRLAMEL GLDPRQVAVW
101: FQNRRARWKN KKLEEEYSNL KKNHEATLLE KCRLETEVLK LKEQLSEAEK EIQRLLESAE RVPSNSSSSS QSQSMEAVDP PFFGEFGVDG YEDDVFYVPE
201: IHYINGMEWI NLYM

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.