Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92693 | Sorghum | nucleus | 74.48 | 73.55 |
| Zm00001d028129_P002 | Maize | nucleus, plastid | 70.29 | 70.29 |
| Zm00001d048172_P001 | Maize | nucleus | 65.27 | 66.67 |
| TraesCS4D01G261600.1 | Wheat | nucleus | 64.85 | 66.24 |
| TraesCS4A01G040600.1 | Wheat | nucleus | 62.34 | 64.5 |
| TraesCS4B01G261600.1 | Wheat | nucleus | 62.76 | 64.38 |
| HORVU4Hr1G070610.1 | Barley | nucleus | 61.09 | 63.76 |
| GSMUA_Achr7P25990_001 | Banana | nucleus | 34.31 | 53.95 |
| GSMUA_Achr1P22640_001 | Banana | nucleus | 36.82 | 48.35 |
| GSMUA_Achr4P07170_001 | Banana | nucleus | 38.91 | 46.27 |
| CDY67008 | Canola | nucleus | 31.38 | 45.45 |
| Os07t0581700-01 | Rice | nucleus | 44.35 | 44.17 |
| VIT_04s0023g01330.t01 | Wine grape | nucleus | 35.98 | 40.76 |
| GSMUA_Achr8P31170_001 | Banana | nucleus | 35.56 | 40.67 |
| PGSC0003DMT400033036 | Potato | nucleus | 36.4 | 40.65 |
| Bra040941.1-P | Field mustard | nucleus | 37.24 | 40.09 |
| KRH28621 | Soybean | nucleus | 35.98 | 40.0 |
| CDX69241 | Canola | nucleus | 35.98 | 39.63 |
| CDY30312 | Canola | nucleus | 36.82 | 39.46 |
| CDY68376 | Canola | nucleus | 36.4 | 39.19 |
| AT4G36740.2 | Thale cress | nucleus | 35.56 | 39.17 |
| CDX75593 | Canola | nucleus | 35.56 | 39.17 |
| Bra028099.1-P | Field mustard | nucleus | 35.98 | 39.09 |
| KRH76853 | Soybean | nucleus | 34.73 | 38.78 |
| CDX72601 | Canola | nucleus | 34.73 | 38.25 |
| Solyc02g085630.2.1 | Tomato | nucleus | 33.47 | 37.74 |
| CDY35477 | Canola | nucleus | 34.73 | 37.73 |
| CDY24769 | Canola | nucleus | 34.73 | 37.73 |
| Bra017780.1-P | Field mustard | nucleus | 33.89 | 37.33 |
| Solyc02g062960.2.1 | Tomato | nucleus | 31.8 | 37.07 |
| PGSC0003DMT400050373 | Potato | nucleus | 25.52 | 36.97 |
| PGSC0003DMT400011464 | Potato | nucleus | 32.22 | 36.84 |
| PGSC0003DMT400045834 | Potato | nucleus | 32.22 | 36.49 |
| CDY30761 | Canola | nucleus | 33.89 | 36.16 |
| AT2G18550.1 | Thale cress | nucleus | 33.05 | 35.91 |
| KRH69950 | Soybean | nucleus | 31.8 | 35.85 |
| Bra012093.1-P | Field mustard | nucleus | 33.47 | 35.71 |
| CDY70377 | Canola | nucleus | 33.47 | 35.71 |
| CDX81374 | Canola | nucleus | 33.47 | 35.71 |
| Bra031819.1-P | Field mustard | nucleus | 34.31 | 35.5 |
| CDY52162 | Canola | nucleus | 34.31 | 35.5 |
| AT5G66700.1 | Thale cress | nucleus | 33.05 | 34.65 |
| Solyc03g034120.2.1 | Tomato | nucleus | 29.29 | 33.98 |
| Solyc03g034110.2.1 | Tomato | nucleus | 30.13 | 33.8 |
| GSMUA_Achr4P14070_001 | Banana | plastid | 41.42 | 33.79 |
| Bra037154.1-P | Field mustard | nucleus | 31.8 | 33.78 |
| CDY57132 | Canola | nucleus | 31.8 | 33.78 |
| Solyc03g034130.2.1 | Tomato | nucleus | 31.38 | 33.48 |
| PGSC0003DMT400045855 | Potato | nucleus | 29.71 | 33.33 |
| Solyc03g034150.1.1 | Tomato | nucleus | 28.03 | 33.17 |
| PGSC0003DMT400045832 | Potato | nucleus | 31.8 | 32.76 |
| Bra010573.1-P | Field mustard | nucleus | 24.69 | 32.6 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:4331956 | ProteinID:ABF94477.1 | EMBL:AK073446 | ProteinID:BAF11194.1 |
| ProteinID:BAS82795.1 | ncoils:Coil | ProteinID:EAZ25940.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| EnsemblPlantsGene:Os03g0198600 | EnsemblPlants:Os03t0198600-01 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF262 | UniProt:Q10QF2 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0000DB48B2 |
| RefSeq:XP_015629042.1 | SEG:seg | : | : | : | : |
Description
HOMEOBOX GENE 12Homeodomain-leucine zipper transcription factor, Regulation of panicle exsertion (Os03t0198600-01)
Coordinates
chr3:-:5180779..5182185
Molecular Weight (calculated)
26082.7 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.569
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSREEDEKLL FPSFAFPAEC FPEAATSGGE QKKARQRRRR KVKPEAAAAL AGESGGDEQA KKRRLSDEQA RFLEMSFKKE RKLETPRKVQ LAAELGLDAK
101: QVAVWFQNRR ARHKSKLMEE EFAKLRSAHD AVVLQNCHLE TELLKLKERL ADVEEEKAKL AAVAAATTGG GGGGGGGSSS PTSSSFSTVT YHPALAGQFG
201: VEAAAEEADL TYMSEYAYNS YMLELAAAGY CGGVYDQFS
101: QVAVWFQNRR ARHKSKLMEE EFAKLRSAHD AVVLQNCHLE TELLKLKERL ADVEEEKAKL AAVAAATTGG GGGGGGGSSS PTSSSFSTVT YHPALAGQFG
201: VEAAAEEADL TYMSEYAYNS YMLELAAAGY CGGVYDQFS
001: MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
101: QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD
201: ENLLYSPDYI DGLDWMSQFM
Arabidopsis Description
ATHB-21Homeobox-leucine zipper protein ATHB-21 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU70]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.