Factsheet for PGSC0003DMT400033036

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085630.2.1	Tomato	nucleus	82.24	83.02
PGSC0003DMT400011464	Potato	nucleus	62.15	63.64
CDX75593	Canola	nucleus	60.75	59.91
CDX69241	Canola	nucleus	60.28	59.45
KRH76853	Soybean	nucleus	57.48	57.48
VIT_04s0023g01330.t01	Wine grape	nucleus	56.54	57.35
KRH28621	Soybean	nucleus	57.01	56.74
CDX72601	Canola	nucleus	57.01	56.22
PGSC0003DMT400050373	Potato	nucleus	42.99	55.76
PGSC0003DMT400045834	Potato	nucleus	54.67	55.45
AT4G36740.2	Thale cress	nucleus	56.07	55.3
Bra017780.1-P	Field mustard	nucleus	56.07	55.3
PGSC0003DMT400045855	Potato	nucleus	54.67	54.93
Bra040941.1-P	Field mustard	nucleus	56.07	54.05
CDY35477	Canola	nucleus	55.14	53.64
CDY30312	Canola	nucleus	55.61	53.36
CDY24769	Canola	nucleus	54.67	53.18
CDY67008	Canola	nucleus	40.65	52.73
CDY68376	Canola	nucleus	54.67	52.7
AT2G18550.1	Thale cress	nucleus	52.34	50.91
Bra028099.1-P	Field mustard	nucleus	52.34	50.91
PGSC0003DMT400045832	Potato	nucleus	53.27	49.14
KRH69950	Soybean	nucleus	48.6	49.06
Bra010573.1-P	Field mustard	nucleus	41.12	48.62
GSMUA_Achr7P25990_001	Banana	nucleus	34.11	48.03
GSMUA_Achr1P22640_001	Banana	nucleus	40.65	47.8
CDY70377	Canola	nucleus	49.07	46.88
Bra012093.1-P	Field mustard	nucleus	49.07	46.88
CDY30761	Canola	nucleus	48.6	46.43
CDX81374	Canola	nucleus	47.66	45.54
AT5G66700.1	Thale cress	nucleus	48.13	45.18
CDY57132	Canola	nucleus	46.73	44.44
Bra037154.1-P	Field mustard	nucleus	45.79	43.56
Bra031819.1-P	Field mustard	nucleus	46.26	42.86
CDY52162	Canola	nucleus	45.79	42.42
GSMUA_Achr4P07170_001	Banana	nucleus	38.78	41.29
GSMUA_Achr8P31170_001	Banana	nucleus	39.25	40.19
HORVU2Hr1G036680.2	Barley	nucleus	42.99	38.98
TraesCS2D01G199200.1	Wheat	nucleus	42.52	38.24
EER97443	Sorghum	nucleus	40.65	37.66
Zm00001d021934_P001	Maize	nucleus	41.12	37.61
TraesCS2A01G188500.1	Wheat	nucleus	41.59	37.4
TraesCS2B01G405700.1	Wheat	nucleus	38.32	37.1
HORVU2Hr1G092300.1	Barley	nucleus	23.36	37.04
TraesCS2B01G218800.1	Wheat	nucleus	41.12	36.97
Os07t0581700-01	Rice	nucleus	41.12	36.67
Os03t0198600-01	Rice	nucleus	40.65	36.4
Zm00001d006687_P001	Maize	nucleus	37.38	36.04
Zm00001d028129_P002	Maize	nucleus, plastid	38.32	34.31
TraesCS4D01G261600.1	Wheat	nucleus	37.38	34.19
Zm00001d048172_P001	Maize	nucleus	37.38	34.19
HORVU4Hr1G070610.1	Barley	nucleus	36.45	34.06
TraesCS4B01G261600.1	Wheat	nucleus	36.92	33.91
EER92693	Sorghum	nucleus	38.32	33.88
TraesCS4A01G040600.1	Wheat	nucleus	35.98	33.33
TraesCS2D01G385500.1	Wheat	nucleus	38.32	33.2
TraesCSU01G009800.1	Wheat	nucleus	37.38	32.79
HORVU2Hr1G092290.6	Barley	nucleus	33.64	30.9
GSMUA_Achr4P14070_001	Banana	plastid	41.59	30.38

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102583497	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M1AYI1	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400012682	PGSC:PGSC0003DMG400012682	EnsemblPlants:PGSC0003DMT400033036	PRINTS:PR00031
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF281	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI000295E33B	RefSeq:XP_006363140.1	SEG:seg	:	:	:

Description

Homeobox-leucine zipper protein ATHB-40 [Source:PGSC_GENE;Acc:PGSC0003DMG400012682]

Coordinates

chr2:+:40864048..40866463

Molecular Weight (calculated)

25281.9 Da

IEP (calculated)

5.511

GRAVY (calculated)

-0.963

Length

214 amino acids

Sequence
(BLAST)

001: MNNHQIIEDD NMILISQYYP DIYTQLVPQQ GESKPRRRRR KKNKLGEGSG SDQMMMMRKR KLSEEQVNFL EQSFEDEHKL ESERKDKLAA ELGLDPRQVA
101: VWFQNRRARW KSKKLEEEYS KLKSEHDNNV VEKCRLETEV LKLKEQLNES EKEIKRLLLE RCDGVSSNYT SPSASSFSME APFLGEFGME ALDNVFYAQE
201: NNYVQGLDWV NLYI

Best Arabidopsis Sequence Match ( AT4G36740.2 )
(BLAST)

001: MNYTVDDQNM AFISQLYPDV YTQIVQPVGE VKQPKRRRKK TKGSVASADG GNGLFRKRKL TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW
101: FQNRRARWKN KRLEEEYNKL KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERVE GGSSNSPISS SVSVEANETP FFGDYKVGDD GDDYDHLFYP
201: VPENSYIDEA EWMSLYI

Arabidopsis Description

HB-5homeobox protein 40 [Source:TAIR;Acc:AT4G36740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.