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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035469.1-P Field mustard plasma membrane 82.31 81.89
CDY53149 Canola plasma membrane 82.31 81.68
AT1G57980.1 Thale cress plasma membrane 79.49 78.68
AT1G57943.1 Thale cress plasma membrane 79.74 78.14
CDY31805 Canola plasma membrane 83.08 73.14
AT1G09860.1 Thale cress plasma membrane 63.59 64.75
AT1G47603.1 Thale cress plasma membrane 42.05 41.73
AT1G19770.1 Thale cress plasma membrane 35.13 34.86
AT1G44750.1 Thale cress plasma membrane 27.95 28.76
AT4G18190.1 Thale cress plasma membrane 28.46 28.68
AT4G08700.1 Thale cress plasma membrane 25.64 27.7
AT5G41160.1 Thale cress plasma membrane 25.13 26.92
AT1G75470.1 Thale cress plasma membrane 26.67 26.87
AT4G18195.1 Thale cress plasma membrane 26.92 26.65
AT4G18205.1 Thale cress plasma membrane 25.64 26.53
AT4G18197.1 Thale cress plasma membrane 26.15 26.15
AT4G18220.1 Thale cress plasma membrane 25.64 25.64
AT4G18210.1 Thale cress plasma membrane 25.38 25.38
Os04t0587500-01 Rice cytosol, peroxisome 24.36 25.13
Os04t0587400-01 Rice plasma membrane 25.38 24.26
AT2G33750.1 Thale cress plasma membrane 19.49 21.23
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 20.26 20.68
AT1G28220.1 Thale cress plasma membrane 18.46 20.51
AT1G28230.1 Thale cress plasma membrane 18.72 20.51
AT2G24220.2 Thale cress plasma membrane 18.21 18.73
Os04t0587300-01 Rice peroxisome 0.0 0.0
Protein Annotations
MapMan:24.2.1.6EntrezGene:842166UniProt:A0A178WC51ProteinID:AAG50663.1ProteinID:AAG50699.1ProteinID:AEE33482.1
ArrayExpress:AT1G57990EnsemblPlantsGene:AT1G57990RefSeq:AT1G57990TAIR:AT1G57990RefSeq:AT1G57990-TAIR-GEnsemblPlants:AT1G57990.1
TAIR:AT1G57990.1Symbol:ATPUP18EMBL:BT000962GO:GO:0003674GO:GO:0005215GO:GO:0005345
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006810GO:GO:0006863GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:1904823RefSeq:NP_176100.1ProteinID:OAP16007.1PFAM:PF16913
PO:PO:0000005PO:PO:0000293PANTHER:PTHR31376PANTHER:PTHR31376:SF34InterPro:PUP_plantUniProt:Q9C508
TMHMM:TMhelixUniParc:UPI00000AC5BFSEG:seg:::
Description
PUP18PUP18 [Source:UniProtKB/TrEMBL;Acc:A0A178WC51]
Coordinates
chr1:-:21441179..21443036
Molecular Weight (calculated)
44184.3 Da
IEP (calculated)
7.365
GRAVY (calculated)
0.435
Length
390 amino acids
Sequence
(BLAST)
001: MEMTEASKQT TAEGSANPEP DQILSPRRSL ELKQKKWWIS VSLCIFLVLL GDSLVMLLLN FFYVQDNRED SDQDLQYRGT WLQALVQNAA FPLLIPLFFI
101: FPSPKQNQET TNTRFLSFRL ILLYISLGVL VAAHSKLFAL GKLYANFGVF TLISATQLIF TAIFAAIINR FKFTRWIILS IIGSILIYVF GSPEFGGEPD
201: ENEEFYSIQA WLTFAASVAF ALSLCLFQLC FEKVLVKTKR YGNKKVFRMV IEMQICVSFV ATVVCLVGLF ASGENKELQG DSHRFKKGET YYVLSLIGLA
301: LSWQVWAVGL MGLVLYVSGV FGDVVHMCTS PLVALFVVLA FDFMDDEFSW PRIGTLIATV VALGSYFYTL HKRNKKKMVE LYQTENNIDV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.