Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69297 | Canola | plasma membrane | 25.04 | 82.46 |
| CDY68749 | Canola | cytosol | 48.78 | 82.28 |
| CDY69298 | Canola | cytosol | 11.44 | 80.3 |
| CDY63360 | Canola | plasma membrane | 44.53 | 79.36 |
| AT4G15215.11 | Thale cress | cytosol | 72.73 | 72.37 |
| AT4G15230.1 | Thale cress | cytosol | 71.08 | 70.57 |
| KRH50642 | Soybean | plasma membrane | 23.31 | 64.29 |
| AT2G37280.3 | Thale cress | cytosol, nucleus, plasma membrane | 57.63 | 55.55 |
| TraesCS7A01G085800.1 | Wheat | cytosol | 14.96 | 55.47 |
| Zm00001d015022_P001 | Maize | plastid | 7.63 | 53.27 |
| TraesCS5D01G163600.1 | Wheat | plasma membrane | 55.11 | 53.23 |
| OQU78699 | Sorghum | cytosol, nucleus, plasma membrane | 56.83 | 53.09 |
| TraesCS5B01G155600.1 | Wheat | plasma membrane | 52.73 | 52.62 |
| TraesCS7D01G080300.1 | Wheat | cytosol, nucleus, plasma membrane | 52.3 | 51.89 |
| TraesCS5B01G155500.3 | Wheat | plasma membrane | 55.68 | 51.7 |
| OQU91495 | Sorghum | cytosol, nucleus, plasma membrane | 45.54 | 51.46 |
| KXG22958 | Sorghum | cytosol, nucleus, plasma membrane | 55.68 | 50.92 |
| Zm00001d034566_P001 | Maize | cytosol | 8.42 | 48.55 |
| AT1G15210.1 | Thale cress | plastid | 49.42 | 47.64 |
| Zm00001d009216_P001 | Maize | cytosol | 9.78 | 47.55 |
| Zm00001d004097_P001 | Maize | cytosol | 9.78 | 43.04 |
| VIT_07s0005g02240.t01 | Wine grape | cytosol, golgi, mitochondrion, nucleus | 13.17 | 39.19 |
| Os01t0724400-00 | Rice | cytosol | 3.74 | 29.89 |
Protein Annotations
| MapMan:24.1.3.2.2 | Gene3D:3.40.50.300 | EntrezGene:827189 | InterPro:AAA+_ATPase | InterPro:ABCG_PDR_2 | InterPro:ABC_2_trans |
| InterPro:ABC_trans_N | InterPro:ABC_transporter-like | ProteinID:AEE83574.2 | EMBL:AL161541 | ArrayExpress:AT4G15236 | EnsemblPlantsGene:AT4G15236 |
| RefSeq:AT4G15236 | TAIR:AT4G15236 | RefSeq:AT4G15236-TAIR-G | EnsemblPlants:AT4G15236.1 | TAIR:AT4G15236.1 | Unigene:At.54334 |
| ProteinID:DAA00883.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| InterPro:IPR003439 | RefSeq:NP_680694.3 | InterPro:P-loop_NTPase | InterPro:PDR_assoc | PFAM:PF00005 | PFAM:PF01061 |
| PFAM:PF08370 | PFAM:PF14510 | PO:PO:0000293 | PFscan:PS50893 | PANTHER:PTHR19241 | PANTHER:PTHR19241:SF449 |
| UniProt:Q7PC81 | SMART:SM00382 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI000848C2F4 | : |
Description
ABCG43ABC-2 and Plant PDR ABC-type transporter family protein [Source:TAIR;Acc:AT4G15236]
Coordinates
chr4:+:8696677..8702727
Molecular Weight (calculated)
157633.0 Da
IEP (calculated)
8.377
GRAVY (calculated)
0.032
Length
1390 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMPQTDGVE FASRNNLENG DGDQVRSQWV AIERSPTCKR ITTALFCKRD EQGKRSQRRV MDVSKLEDLD RRLFIDELIR HVEDDNRVLL QKIRTRTDEV
0101: GIDLPKIEVR FSDLFVEAEC EVVHGKPIPT LWNAIASKLS RFTFSKQEDK ISILKGVSGI IRPKRMTLLL GPPGCGKTTL LLALSGRLDP SLKTRGEVSY
0201: NGHLFSEFVP EKTSSYVSQN DLHIPELSVR ETLDFSGCFQ GAGSRLEMMK EISRREKLKG IVPDPDIDAY MKAASIEGSK TNLQTDYILK ILGLTICADT
0301: RVGDASRPGI SGGQKRRLTT GEMIVGPIKT LFMDEISNGL DSSTTFQILS CLQQFARLSE GTILVSLLQP APETFELFDD LILMGEGKII YHGPRDFICS
0401: FFEDCGFKCP QRKSVAEFLQ EVISRKDQEQ YWCHRDKPYC YVSIDSFIEK FKKSDLGLQL QDELSKTYDK SQTQKDGLCI RKYSLSNWDM FKACSRREFL
0501: LMKRNSFVYV FKSGLLIFIG SIAMTVYLRT GSTRDSLHAN YLLGSLFFSL IKLLADGLPE LTLTVSRIAV FCKQKELYFY PAWAYAIPSA ILKIPISFLE
0601: SFLWTMLTYY VIGYSPEAGR FIRQVLILFA LHLSCISMFR AIGAVFRDFD VATTIGSISI VLLSVFGGFI VRKPSMPSWL EWGFWLSPLS YAEIGLTSNE
0701: FFAPMWRKMT SENRTLGEQV LDARGLNFGN QSYWNAFGAL IGFTLFFNTV FALALTFLKT SQRSRVIVSH DKNTQSSEKD SKIASHSKNA LPFEPLTFTF
0801: QDVQYFIETP QGKKLQLLSD VTGAFKPGVL TALMGVSGAG KTTLLDVLSG RKTRGDIKGQ IEVGGYVKVQ DTFSRVSGYC EQFDIHSPNL TVQESLKYSA
0901: WLRLPCNISS ETKSAIVNEV LETIELEEIK DSLVGVPGIS GVTAEQRKRL TIAVELVSNP SIIFMDEPTT GLDARAAAIV MRAVKNIAET GRTVVCTIHQ
1001: PSIDIFEAFD ELILMKNGGK IIYYGPLGQH SSKVIEYFMS IPGVPKLKEN SNPATWILDI TSKSSEDKLG VDLAHIYEES TLFKENKMVI EQTRCTSLGS
1101: ERLILSSRYA QTSWEQFKAC LWKQHLSYWR NPSYNLTRII FMCFTCMLCG ILFLQKAKEI NNQQDLFNVF GSMFTVVLFS GINNCSTVIF CVATERNVFY
1201: RERFSRMYNP WAYSLAQVLV EIPYSLFQSI IYVIIVYPMV GYHWSVYKVF WSFYSIFCSL LIFNYFGMLL VVVTPNVHIA FTLRSSFYAI VNLFAGYVMP
1301: KPNIPRWWIW MYYLSPTSWV LNGLLTSQYG DMEKEILAFG EKKKVSAFLE DYFGYRYDSL ALVAVVLIAF PILLASLFAF FIGKLNFQKK
0101: GIDLPKIEVR FSDLFVEAEC EVVHGKPIPT LWNAIASKLS RFTFSKQEDK ISILKGVSGI IRPKRMTLLL GPPGCGKTTL LLALSGRLDP SLKTRGEVSY
0201: NGHLFSEFVP EKTSSYVSQN DLHIPELSVR ETLDFSGCFQ GAGSRLEMMK EISRREKLKG IVPDPDIDAY MKAASIEGSK TNLQTDYILK ILGLTICADT
0301: RVGDASRPGI SGGQKRRLTT GEMIVGPIKT LFMDEISNGL DSSTTFQILS CLQQFARLSE GTILVSLLQP APETFELFDD LILMGEGKII YHGPRDFICS
0401: FFEDCGFKCP QRKSVAEFLQ EVISRKDQEQ YWCHRDKPYC YVSIDSFIEK FKKSDLGLQL QDELSKTYDK SQTQKDGLCI RKYSLSNWDM FKACSRREFL
0501: LMKRNSFVYV FKSGLLIFIG SIAMTVYLRT GSTRDSLHAN YLLGSLFFSL IKLLADGLPE LTLTVSRIAV FCKQKELYFY PAWAYAIPSA ILKIPISFLE
0601: SFLWTMLTYY VIGYSPEAGR FIRQVLILFA LHLSCISMFR AIGAVFRDFD VATTIGSISI VLLSVFGGFI VRKPSMPSWL EWGFWLSPLS YAEIGLTSNE
0701: FFAPMWRKMT SENRTLGEQV LDARGLNFGN QSYWNAFGAL IGFTLFFNTV FALALTFLKT SQRSRVIVSH DKNTQSSEKD SKIASHSKNA LPFEPLTFTF
0801: QDVQYFIETP QGKKLQLLSD VTGAFKPGVL TALMGVSGAG KTTLLDVLSG RKTRGDIKGQ IEVGGYVKVQ DTFSRVSGYC EQFDIHSPNL TVQESLKYSA
0901: WLRLPCNISS ETKSAIVNEV LETIELEEIK DSLVGVPGIS GVTAEQRKRL TIAVELVSNP SIIFMDEPTT GLDARAAAIV MRAVKNIAET GRTVVCTIHQ
1001: PSIDIFEAFD ELILMKNGGK IIYYGPLGQH SSKVIEYFMS IPGVPKLKEN SNPATWILDI TSKSSEDKLG VDLAHIYEES TLFKENKMVI EQTRCTSLGS
1101: ERLILSSRYA QTSWEQFKAC LWKQHLSYWR NPSYNLTRII FMCFTCMLCG ILFLQKAKEI NNQQDLFNVF GSMFTVVLFS GINNCSTVIF CVATERNVFY
1201: RERFSRMYNP WAYSLAQVLV EIPYSLFQSI IYVIIVYPMV GYHWSVYKVF WSFYSIFCSL LIFNYFGMLL VVVTPNVHIA FTLRSSFYAI VNLFAGYVMP
1301: KPNIPRWWIW MYYLSPTSWV LNGLLTSQYG DMEKEILAFG EKKKVSAFLE DYFGYRYDSL ALVAVVLIAF PILLASLFAF FIGKLNFQKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.