Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72671 | Canola | cytosol | 73.81 | 70.99 |
| Bra011831.1-P | Field mustard | cytosol | 48.41 | 53.04 |
| CDY71221 | Canola | cytosol, nucleus, plastid | 32.54 | 42.71 |
| AT5G65040.1 | Thale cress | mitochondrion | 29.37 | 32.74 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 36.51 | 31.29 |
| AT1G78020.1 | Thale cress | mitochondrion | 38.1 | 29.63 |
Protein Annotations
| ArrayExpress:AT4G39795 | EnsemblPlants:AT4G39795.1 | EnsemblPlantsGene:AT4G39795 | EntrezGene:830138 | GO:GO:0008150 | InterPro:IPR007650 |
| InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 | PFAM:PF04570 | PFscan:PS51795 | PO:PO:0000293 |
| ProteinID:AEE87120.1 | RefSeq:AT4G39795 | RefSeq:AT4G39795-TAIR-G | RefSeq:NP_680776.2 | TAIR:AT4G39795 | TAIR:AT4G39795.1 |
| UniParc:UPI0000196F6D | UniProt:F4JW68 | MapMan:27.3.3 | : | : | : |
Description
Protein of unknown function (DUF581) [Source:TAIR;Acc:AT4G39795]
Coordinates
chr4:+:18466519..18467499
Molecular Weight (calculated)
14104.7 Da
IEP (calculated)
8.641
GRAVY (calculated)
-0.779
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLGNRPRPQ MQRTASITRI TIEVDGDQTA GQDSDVSMTV VDGGENYAQR FLSPVNHQRN ERKYGGRSSP SSFLVNCGFC KRGLAPGRDI YMYKGDAAFC
101: SIECREQQME HDEGKTRNRV VLSPSK
101: SIECREQQME HDEGKTRNRV VLSPSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.