Factsheet for Bra006538.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88861	Canola	endoplasmic reticulum	99.39	23.2
Bra020082.1-P	Field mustard	plasma membrane	1.83	0.87
GSMUA_Achr5P06120_001	Banana	cytosol, plasma membrane, vacuole	1.83	0.71
Solyc06g008890.2.1	Tomato	plasma membrane	0.61	0.41
OQU79589	Sorghum	plasma membrane	0.3	0.16
PGSC0003DMT400056565	Potato	plasma membrane	0.0	0.0
KRH63022	Soybean	plasma membrane	0.0	0.0
KXG19268	Sorghum	plasma membrane	0.0	0.0
Os01t0648600-00	Rice	plasma membrane	0.0	0.0
Os06t0142650-00	Rice	plasma membrane	0.0	0.0
PGSC0003DMT400037904	Potato	plasma membrane, vacuole	0.0	0.0
KRH03737	Soybean	plasma membrane	0.0	0.0
TraesCS4A01G390900.1	Wheat	plasma membrane	0.0	0.0
TraesCS7A01G091000.1	Wheat	plasma membrane	0.0	0.0
TraesCS7D01G086800.1	Wheat	plasma membrane	0.0	0.0
VIT_11s0016g04840.t01	Wine grape	plasma membrane	0.0	0.0
Zm00001d045388_P001	Maize	plasma membrane	0.0	0.0
KRH56640	Soybean	golgi, plasma membrane	0.0	0.0
KRH54870	Soybean	plasma membrane	0.0	0.0
AT5G20050.1	Thale cress	plasma membrane	0.0	0.0
HORVU7Hr1G020720.3	Barley	plasma membrane	0.0	0.0
EES01170	Sorghum	plasma membrane, plastid	0.0	0.0
Bra040074.1-P	Field mustard	cytosol	0.0	0.0
Bra036747.1-P	Field mustard	plasma membrane	0.0	0.0
Bra028049.1-P	Field mustard	plasma membrane	0.0	0.0
Bra027975.1-P	Field mustard	plasma membrane	0.0	0.0
Bra023955.1-P	Field mustard	plasma membrane	0.0	0.0
Bra011337.1-P	Field mustard	plasma membrane	0.0	0.0
Bra009730.1-P	Field mustard	plasma membrane	0.0	0.0
Bra006536.1-P	Field mustard	plasma membrane, vacuole	0.0	0.0
Bra000686.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	EnsemblPlantsGene:Bra006538	EnsemblPlants:Bra006538.1	EnsemblPlants:Bra006538.1-P
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004128	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005794	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009628	GO:GO:0009651	GO:GO:0016491	GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927
UniProt:M4CQP7	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970
PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF174	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000253FFCA	:	:	:

Description

AT5G20080 (E=2e-180) | NADH-cytochrome b5 reductase, putative

Coordinates

chrA03:+:3961366..3964780

Molecular Weight (calculated)

35841.4 Da

IEP (calculated)

9.562

GRAVY (calculated)

-0.197

Length

328 amino acids

Sequence
(BLAST)

001: MATSFFRRLA RSAPIAFPAA LRSQIKSGHG TFRFSAGAIA ALSGGFSCYY LTSGNNLAYL DQAKEETGPK TALNPDKWLE FKLQDTATVS HNTKLFRFSF
101: DPSANLGLHV ASCLLTRAPL GYNAEGKTKY VVRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPIEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDTI VKNPEDNTKI TLLYANVSPD DILLKQKLDA LQANHPNLKV FYTVDNPTKN WKGGVGYVSK DMALKGLPLP ADDTLILVCG PPGMMEHVSG
301: GKAPDWSQGE VKGILKELGF TEQMVFKF

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.