Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39063 | Canola | extracellular | 100.0 | 100.0 |
| Bra003740.1-P | Field mustard | extracellular | 92.5 | 92.5 |
| Bra015809.1-P | Field mustard | extracellular | 90.0 | 91.14 |
| Bra015811.1-P | Field mustard | extracellular | 90.0 | 90.0 |
| AT1G75830.1 | Thale cress | extracellular | 86.25 | 86.25 |
| Bra008225.1-P | Field mustard | extracellular | 75.0 | 75.0 |
| Bra015808.1-P | Field mustard | extracellular | 46.25 | 64.91 |
| Bra004900.1-P | Field mustard | extracellular | 50.0 | 50.0 |
| Bra025396.1-P | Field mustard | extracellular | 47.5 | 47.5 |
Protein Annotations
| EnsemblPlants:Bra008226.1 | EnsemblPlants:Bra008226.1-P | EnsemblPlantsGene:Bra008226 | Gene3D:3.30.30.10 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | InterPro:Defensin_plant | InterPro:IPR036574 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | PANTHER:PTHR33147 |
| PANTHER:PTHR33147:SF4 | PFAM:PF00304 | ScanProsite:PS00940 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00505 |
| SUPFAM:SSF57095 | TMHMM:TMhelix | UniParc:UPI0002545D3B | UniProt:M4CVH9 | MapMan:26.8.3.2.1 | : |
Description
AT2G26020 (E=4e-033) PDF1.2b | PDF1.2b (plant defensin 1.2b)
Coordinates
chrA02:+:13943422..13943773
Molecular Weight (calculated)
8718.7 Da
IEP (calculated)
8.210
GRAVY (calculated)
0.268
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFASIIAP LFAALVLFAA FEAPTMVEAQ KLCERPSGTW SGVCGNNNAC KNQCINLEKA RHGSCNYVFP AHKCICYFPC
1: MAKFASIITF IYAALVLFAA FEVPTMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2BPDF1.2b [Source:UniProtKB/TrEMBL;Acc:A0A178VQC3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.