Factsheet for Bra025396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86368	Canola	extracellular	97.5	97.5
Bra004900.1-P	Field mustard	extracellular	65.0	65.0
Bra008225.1-P	Field mustard	extracellular	50.0	50.0
Bra015809.1-P	Field mustard	extracellular	48.75	49.37
Bra015811.1-P	Field mustard	extracellular	48.75	48.75
Bra008226.1-P	Field mustard	extracellular	47.5	47.5
Bra015808.1-P	Field mustard	extracellular	33.75	47.37
Bra003740.1-P	Field mustard	extracellular	46.25	46.25

Protein Annotations

EnsemblPlants:Bra025396.1	EnsemblPlants:Bra025396.1-P	EnsemblPlantsGene:Bra025396	Gene3D:3.30.30.10	InterPro:IPR036574	InterPro:Scorpion_toxin-like_sf
PANTHER:PTHR33147	PANTHER:PTHR33147:SF4	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF57095	TMHMM:TMhelix
UniParc:UPI000253FA79	UniProt:M4E9E0	MapMan:35.2	:	:	:

Description

AT2G26020 (E=2e-012) PDF1.2b | PDF1.2b (plant defensin 1.2b)

Coordinates

chrA06:-:21825845..21826175

Molecular Weight (calculated)

9258.6 Da

IEP (calculated)

9.550

GRAVY (calculated)

0.064

Length

80 amino acids

Sequence
(BLAST)

1: MAKFASIITL LFIVLIIFSA FEEPTMVKGQ KSCKRKPKAG RRFCKRDAIC QKTCVEIEKA IRGTCDYKFP WTQCFCHFPC

Best Arabidopsis Sequence Match ( AT5G44420.1 )
(BLAST)

1: MAKFASIITL IFAALVLFAA FDAPAMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC

Arabidopsis Description

PDF1.2ADefensin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI23]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.