Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87660 | Canola | extracellular | 100.0 | 100.0 |
| Bra015809.1-P | Field mustard | extracellular | 90.0 | 91.14 |
| Bra008226.1-P | Field mustard | extracellular | 90.0 | 90.0 |
| Bra003740.1-P | Field mustard | extracellular | 87.5 | 87.5 |
| Bra008225.1-P | Field mustard | extracellular | 70.0 | 70.0 |
| Bra015808.1-P | Field mustard | extracellular | 42.5 | 59.65 |
| Bra004900.1-P | Field mustard | extracellular | 48.75 | 48.75 |
| Bra025396.1-P | Field mustard | extracellular | 48.75 | 48.75 |
Protein Annotations
| MapMan:26.8.3.2.1 | Gene3D:3.30.30.10 | ProteinID:AAN23105 | ProteinID:AAN23105.1 | ProteinID:AAQ92328 | ProteinID:AAQ92328.1 |
| EMBL:AF528180 | EMBL:AY383485 | EnsemblPlantsGene:Bra015811 | EnsemblPlants:Bra015811.1 | EnsemblPlants:Bra015811.1-P | InterPro:Defensin_plant |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | InterPro:IPR036574 |
| UniProt:M4DH34 | PFAM:PF00304 | ScanProsite:PS00940 | PANTHER:PTHR33147 | PANTHER:PTHR33147:SF4 | SMART:SM00505 |
| SUPFAM:SSF57095 | InterPro:Scorpion_toxin-like | InterPro:Scorpion_toxin-like_sf | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002541FEA |
| SEG:seg | : | : | : | : | : |
Description
AT2G26020 (E=2e-032) PDF1.2b | PDF1.2b (plant defensin 1.2b)
Coordinates
chrA07:+:20749265..20749600
Molecular Weight (calculated)
8830.8 Da
IEP (calculated)
8.404
GRAVY (calculated)
0.336
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKFVSIITL LFAALVLFAA FEAPTMVKAQ KLCERSSGTW SGVCGNNNAC KNQCINLEGA RHGSCNYVFP YHRCICYFPC
1: MAKFASIITL IFAALVLFAA FDAPAMVEAQ KLCEKPSGTW SGVCGNSNAC KNQCINLEGA KHGSCNYVFP AHKCICYVPC
Arabidopsis Description
PDF1.2ADefensin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI23]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.