CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76692	Canola	cytosol	87.69	40.56
GSMUA_Achr6P24390_001	Banana	cytosol	1.5	1.42
Bra040440.1-P	Field mustard	cytosol	1.5	1.34
CDY53719	Canola	cytosol	1.5	1.34
CDX93916	Canola	cytosol	1.5	1.32
AT3G63260.1	Thale cress	cytosol	1.5	1.28
CDY65655	Canola	cytosol	0.6	1.19
CDY08298	Canola	cytosol	1.2	1.1
CDY06483	Canola	cytosol	1.2	1.1
Zm00001d031014_P001	Maize	cytosol, plasma membrane	1.2	1.08
KXG23933	Sorghum	cytosol	1.2	1.08
TraesCS5D01G386800.1	Wheat	cytosol	1.2	1.07
TraesCS5B01G380400.1	Wheat	cytosol	1.2	1.07
TraesCS5A01G376700.1	Wheat	cytosol	1.2	1.07
HORVU5Hr1G093370.1	Barley	cytosol	1.2	1.07
KXG37965	Sorghum	cytosol	1.2	1.06
Zm00001d033275_P007	Maize	plasma membrane	1.2	1.06
Os03t0638800-01	Rice	plasma membrane	1.2	1.06
CDY68821	Canola	cytosol	1.2	1.04
CDY49058	Canola	nucleus	1.2	1.04
CDY37517	Canola	cytosol	1.2	1.04
CDY21438	Canola	cytosol	1.2	1.04
CDY56447	Canola	cytosol	1.2	1.03
VIT_07s0151g00500.t01	Wine grape	cytosol	1.2	0.99
CDY34236	Canola	cytosol	0.9	0.86
GSMUA_Achr7P01410_001	Banana	cytosol	0.9	0.85
GSMUA_Achr4P21230_001	Banana	cytosol	0.9	0.81
CDY10667	Canola	cytosol	0.9	0.79
CDY10304	Canola	cytosol	0.9	0.79
CDY55265	Canola	cytosol	0.9	0.79
CDX99149	Canola	cytosol, plasma membrane, plastid	0.0	0.0

Protein Annotations

Gene3D:3.20.20.330	MapMan:4.1.2.2.6.3.1	InterPro:Betaine-hCys_S-MeTrfase_BHMT	EnsemblPlants:CDX93917	ProteinID:CDX93917	ProteinID:CDX93917.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009086
GO:GO:0009987	GO:GO:0016740	GO:GO:0047150	EnsemblPlantsGene:GSBRNA2T00156737001	InterPro:HCY_dom	InterPro:HCY_dom_sf
InterPro:IPR003726	InterPro:IPR036589	PFAM:PF02574	PIRSF:PIRSF037505	PFscan:PS50970	PANTHER:PTHR21091
PANTHER:PTHR21091:SF159	SUPFAM:SSF82282	UniParc:UPI0004EE4983	SEG:seg	:	:

Description

BnaC04g20760D

Coordinates

chrLK031878:+:647762..649804

Molecular Weight (calculated)

36434.2 Da

IEP (calculated)

5.295

GRAVY (calculated)

-0.162

Length

333 amino acids

Sequence
(BLAST)

001: MKELLKETGG YAIIDGGLAT ELERHGADLN DPLWSAKCLL TSPHLIHTVH LDYLEAGADI ISSASYQATI QGFEAKGYSI EKSESLLRKS VEIACEARST
101: YYDKCKDDDD KKILKKRPIL VAASVGSYGA FLADGSEYSG IYGDLITLET LKDFHRRRVQ VLAESGADII AFETIPNKLE AQAFAELLDE GVAKIPGWFS
201: FNSKDGVNVV SGDSIKECIA IAEACEKVVA VGINCTPPRF IEGLVLEIAK VTSKPILVYP NSGERYDPER KEWVENTGVG NEDFVSYVEK WMDAGVSLLG
301: GCCRTTPTTI RAIHKRLVSR RSLFSSSSSS SHH

Best Arabidopsis Sequence Match ( AT3G63250.1 )
(BLAST)

001: MTGNSFNSMK DFLKQTGGYA VIDGGLATEF ERHGADLNDP LWSAKCLVTS PHLIHTVHLD YLEAGADIIS SASYQATIQG FEAKGFSREE SESLLKKSVE
101: IATEARNSYY DKCGTSSSMD DKILKKRPIL VAASVGSYGA YLADGSEYSG IYGDSITLEK LKDFHRRRLQ VLAESGADLI AFETIPNKIE AQAFADLLEE
201: GDVKIPGWFS FNSKDGVNVV SGDSIKECIS IAENCEKVVA VGINCTPPRF IEGLVLEIEK VTSKPILVYP NSGESYDADR KEWVENTGVG DEDFVSYVEK
301: WMDAGVSLLG GCCRTTPTTI RAIHKRLVNR RSL

Arabidopsis Description

HMT-2Homocysteine S-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.