CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32914	Canola	mitochondrion, plastid	53.45	73.81
CDY50469	Canola	mitochondrion	81.9	72.52
CDY20704	Canola	mitochondrion	84.48	72.06
CDY32915	Canola	mitochondrion	84.48	72.06
AT5G56940.1	Thale cress	mitochondrion	76.72	65.93
Solyc07g008660.2.1	Tomato	plastid	65.52	57.58
KRH12416	Soybean	mitochondrion	64.66	56.82
PGSC0003DMT400059174	Potato	cytosol	54.31	56.25
KRH37413	Soybean	mitochondrion	63.79	56.06
VIT_11s0016g02040.t01	Wine grape	mitochondrion	65.52	55.88
GSMUA_Achr10P...	Banana	mitochondrion	61.21	52.99
CDX69073	Canola	mitochondrion	40.52	41.59
CDX75448	Canola	mitochondrion	39.66	40.71

Protein Annotations

Gene3D:3.30.1320.10	MapMan:35.1	GO:A0A078FFZ9	UniProt:A0A078FFZ9	EnsemblPlants:CDY11894	ProteinID:CDY11894
ProteinID:CDY11894.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00060731001	InterPro:IPR023803	PFAM:PF00886
PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565	UniParc:UPI0004EE5EEB

Description

BnaC03g13200DBnaC03g13200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFZ9]

Coordinates

chrLK032015:-:292787..295307

Molecular Weight (calculated)

12941.7 Da

IEP (calculated)

10.023

GRAVY (calculated)

-0.682

Length

116 amino acids

Sequence
(BLAST)

001: MVVRLRLSRL GCKNRPSLSY FNPLPGQDGG KRMGLKFDRI KYWLSVGAQA SNPVQRLLFR SGLLPPPPMV AMGHKGGERD THVVDPTTGR CVDAERKPPV
101: MDNELKEEEN AEDKSP

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.