CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20704	Canola	mitochondrion	94.05	58.09
CDY32915	Canola	mitochondrion	94.05	58.09
CDY11894	Canola	mitochondrion	73.81	53.45
CDY50469	Canola	mitochondrion	83.33	53.44
AT5G56940.1	Thale cress	mitochondrion	77.38	48.15
PGSC0003DMT400059174	Potato	cytosol	57.14	42.86
VIT_11s0016g02040.t01	Wine grape	mitochondrion	59.52	36.76
Bra006841.1-P	Field mustard	mitochondrion	57.14	36.64
Solyc07g008660.2.1	Tomato	plastid	57.14	36.36
KRH12416	Soybean	mitochondrion	55.95	35.61
KRH37413	Soybean	mitochondrion	55.95	35.61
GSMUA_Achr10P...	Banana	mitochondrion	51.19	32.09
CDX69073	Canola	mitochondrion	30.95	23.01
CDX75448	Canola	mitochondrion	30.95	23.01

Protein Annotations

Gene3D:3.30.1320.10	MapMan:35.1	GO:A0A078H600	UniProt:A0A078H600	EnsemblPlants:CDY32914	ProteinID:CDY32914
ProteinID:CDY32914.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00053093001	InterPro:IPR023803	PANTHER:PTHR12919
PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565	UniParc:UPI0004EEABD1	:

Description

BnaC02g11980DBnaC02g11980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H600]

Coordinates

chrLK032302:-:301440..302269

Molecular Weight (calculated)

9335.2 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.695

Length

84 amino acids

Sequence
(BLAST)

1: MGHCFKNLYW LSVGAQASDP VQRLLFRSGL LPPPPMVAMG RKGGERDTRP VDPMTGRFVD AEKKTPVIID NQPKEEDNAQ DKSP

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.