Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g008660.2.1 | Tomato | plastid | 96.43 | 81.82 |
| KRH12416 | Soybean | mitochondrion | 76.79 | 65.15 |
| KRH37413 | Soybean | mitochondrion | 76.79 | 65.15 |
| VIT_11s0016g02040.t01 | Wine grape | mitochondrion | 75.89 | 62.5 |
| Bra002779.1-P | Field mustard | mitochondrion | 72.32 | 61.83 |
| CDY50469 | Canola | mitochondrion | 72.32 | 61.83 |
| GSMUA_Achr10P... | Banana | mitochondrion | 73.21 | 61.19 |
| AT5G56940.1 | Thale cress | mitochondrion | 72.32 | 60.0 |
| Bra035637.1-P | Field mustard | mitochondrion | 71.43 | 58.82 |
| CDY20704 | Canola | mitochondrion | 71.43 | 58.82 |
| CDY32915 | Canola | mitochondrion | 70.54 | 58.09 |
| CDY32914 | Canola | mitochondrion, plastid | 42.86 | 57.14 |
| CDY11894 | Canola | mitochondrion | 56.25 | 54.31 |
| Bra006841.1-P | Field mustard | mitochondrion | 33.93 | 29.01 |
Protein Annotations
| MapMan:17.7.1.2.14 | Gene3D:3.30.1320.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR023803 | UniProt:M1C3W8 | PFAM:PF00886 | EnsemblPlantsGene:PGSC0003DMG400022985 | PGSC:PGSC0003DMG400022985 | EnsemblPlants:PGSC0003DMT400059174 |
| PANTHER:PTHR12919 | PANTHER:PTHR12919:SF28 | InterPro:Ribosomal_S16 | InterPro:Ribosomal_S16_dom_sf | SUPFAM:SSF54565 | TIGRFAMs:TIGR00002 |
| UniParc:UPI000296AB17 | : | : | : | : | : |
Description
30S ribosomal protein S16 [Source:PGSC_GENE;Acc:PGSC0003DMG400022985]
Coordinates
chr7:+:6045945..6049162
Molecular Weight (calculated)
12175.6 Da
IEP (calculated)
8.975
GRAVY (calculated)
-0.688
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADSRSPRD GKHLEVLGYY NPLPGQDGGK RMGLNFDRLK YWLSVGAQPS EPVQRLLFRA GVLPPPPMLA MGQKGGPRDT RLVDPMTGRI TTPESAKSAN
101: PTVGSEVEED KD
101: PTVGSEVEED KD
001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA
Arabidopsis Description
RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.