Factsheet for Solyc07g008660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059174	Potato	cytosol	81.82	96.43
KRH37413	Soybean	mitochondrion	77.27	77.27
KRH12416	Soybean	mitochondrion	76.52	76.52
VIT_11s0016g02040.t01	Wine grape	mitochondrion	78.79	76.47
GSMUA_Achr10P...	Banana	mitochondrion	76.52	75.37
Bra002779.1-P	Field mustard	mitochondrion	74.24	74.81
CDY50469	Canola	mitochondrion	74.24	74.81
AT5G56940.1	Thale cress	mitochondrion	74.24	72.59
Bra035637.1-P	Field mustard	mitochondrion	73.48	71.32
CDY20704	Canola	mitochondrion	73.48	71.32
CDY32915	Canola	mitochondrion	72.73	70.59
CDY11894	Canola	mitochondrion	57.58	65.52
CDY32914	Canola	mitochondrion, plastid	36.36	57.14
Bra006841.1-P	Field mustard	mitochondrion	32.58	32.82

Protein Annotations

MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	EMBL:AB365528	UniProt:B3IWG3	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023803	HAMAP:MF_00385	PFAM:PF00886	PANTHER:PTHR12919
PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565	EnsemblPlantsGene:Solyc07g008660.2	EnsemblPlants:Solyc07g008660.2.1
TIGRFAMs:TIGR00002	UniParc:UPI0001765D7B	:	:	:	:

Description

30S ribosomal protein S16-1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G34620) UniProtKB/Swiss-Prot;Acc:O65686]

Coordinates

chr7:-:3593472..3596877

Molecular Weight (calculated)

14614.7 Da

IEP (calculated)

10.397

GRAVY (calculated)

-0.569

Length

132 amino acids

Sequence
(BLAST)

001: MVVRLRLSRF GCKNKPFYRV MAADSRSPRD GKHLEVLGYY NPLPGQDGGK RMGLNFDRLK YWLSVGAQPS DPVQRLLFRA GVLPPPPMLA MGQKGGPRDT
101: RLVDPMTGRI TTPESTKSAV PTVGSEVDED KD

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.