CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20704	Canola	mitochondrion	99.26	99.26
CDY50469	Canola	mitochondrion	92.65	96.18
CDY32914	Canola	mitochondrion, plastid	58.09	94.05
AT5G56940.1	Thale cress	mitochondrion	86.76	87.41
CDY11894	Canola	mitochondrion	72.06	84.48
VIT_11s0016g02040.t01	Wine grape	mitochondrion	72.79	72.79
KRH12416	Soybean	mitochondrion	70.59	72.73
KRH37413	Soybean	mitochondrion	70.59	72.73
Solyc07g008660.2.1	Tomato	plastid	70.59	72.73
PGSC0003DMT400059174	Potato	cytosol	58.09	70.54
GSMUA_Achr10P...	Banana	mitochondrion	66.18	67.16
CDX69073	Canola	mitochondrion	44.85	53.98
CDX75448	Canola	mitochondrion	44.85	53.98

Protein Annotations

MapMan:17.7.1.2.14	Gene3D:3.30.1320.10	GO:A0A078H2T6	UniProt:A0A078H2T6	EnsemblPlants:CDY32915	ProteinID:CDY32915
ProteinID:CDY32915.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00053095001	InterPro:IPR023803	HAMAP:MF_00385
PFAM:PF00886	PANTHER:PTHR12919	PANTHER:PTHR12919:SF28	InterPro:Ribosomal_S16	InterPro:Ribosomal_S16_dom_sf	SUPFAM:SSF54565
TIGRFAMs:TIGR00002	UniParc:UPI0004EC87D4	:	:	:	:

Description

BnaC02g11990DBnaC02g11990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2T6]

Coordinates

chrLK032302:-:306218..307940

Molecular Weight (calculated)

15305.6 Da

IEP (calculated)

10.807

GRAVY (calculated)

-0.687

Length

136 amino acids

Sequence
(BLAST)

001: MVVRLRLSRL GCKNRPFFRV MATDSRSPRD GKHIEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQAS DPVQRLLFRS GLLPPPPMVA MGRKGGERDT
101: RPVDPMTGRF VDAEKKTPVI IDNQPKEEDN AQDKSP

Best Arabidopsis Sequence Match ( AT5G56940.1 )
(BLAST)

001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA

Arabidopsis Description

RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LTS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.