Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032834.1-P | Field mustard | plasma membrane, plastid | 97.39 | 94.21 |
| CDX84921 | Canola | plastid | 94.47 | 93.61 |
| AT1G27595.1 | Thale cress | nucleus | 84.18 | 82.72 |
| CDY11788 | Canola | plastid | 86.1 | 82.67 |
| CDX90095 | Canola | plastid | 84.64 | 81.99 |
| CDY11784 | Canola | cytosol | 13.29 | 72.08 |
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 11.21 | 60.33 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 7.45 | 59.88 |
| KRH52859 | Soybean | nucleus | 53.07 | 51.41 |
| KRH62152 | Soybean | plasma membrane | 52.53 | 50.93 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 41.4 | 50.52 |
| Solyc04g076910.2.1 | Tomato | nucleus | 39.86 | 45.13 |
| CDY04840 | Canola | plastid | 32.49 | 29.07 |
Protein Annotations
| EnsemblPlants:CDY27621 | EnsemblPlantsGene:GSBRNA2T00038371001 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Symplekin/Pta1_N | InterPro:Symplekin_C | ncoils:Coil | PANTHER:PTHR15245 |
| PANTHER:PTHR15245:SF35 | PFAM:PF11935 | PFAM:PF12295 | ProteinID:CDY27621 | ProteinID:CDY27621.1 | SEG:seg |
| SUPFAM:SSF48371 | UniParc:UPI0004EF1FB7 | UniProt:A0A078GQJ4 | MapMan:16.2.1.2.9 | : | : |
Description
BnaA09g27860DBnaA09g27860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQJ4]
Coordinates
chrLK032207:+:354508..364760
Molecular Weight (calculated)
143090.0 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.095
Length
1302 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATAAATARA QALSLLAAAN NHGDLAVKLS SLRQVKEMLL SLEPSLSAEI FPYLAELHSS PETLVRKSLI EIIEEVGLRM LDHSDVLLTV LLVLAKDEDP
0101: LVAKKAISVG TAFYCTILEE MAMQFHHHGK VDRWVGELWK WMVKFKDSVF STALEPGCVG VKVLALKFME TFILLFTPDA SDPENIFNEG SRQMFNISWL
0201: VGGHPILNSA MLMSEASRTF GILLDLIQAA GRLPGALTIT VVSCLAVVAR KRPVHYNSVL SVLLDFHPNL ESVKGCHAAS VQYSIRTALL GFLRCTSSPM
0301: IESRDKLLRA LRAMNAADVA DQVLRQVDKL IRNNERAARE KWSGKNNQAV NHQNSWDLSK KRIMPQGEDD TVNGEVAPKR LRHNNNMHLT PQGQISDSPH
0401: GTVSINGIAS GNHPSDSEPT PVEQMVSMIG ALLAEGDRGA ASLEILISKL HPDMLADIVI TSMKHLPSSP PTSTTSLATP ADIVVSSSIN PMRSPTRQPQ
0501: LPFDSTLPVG SSLSDVPSLN AGVDPRRDPR RDPRRMDPRR SNPSVGPTSL PVGEGKETVP VQIDISTLAS KPLSVPAAGA SGSVHPITVE DSQNKVMGSS
0601: VIRRIDQPDC REELLPIPKE YSYLSKGKSS LDVPLSPCRD DEGIRKTKFD LDPVSVPDFN QHSPSEAGPD FDLHPPVDSN ITAAEESYRE LAPVPSHVEL
0701: TKEQSNTVGK LALERIIESN RHVCGFDCNK IRMALIARLI AQIDAGNDVA AILKEHISVD HREFKGHELV LHVLYHLHSR ANLDTDESSS YASVYENFLI
0801: AVARSFLDTL PPFDKSFSRL FGEAPHLPDS AIKLLNELCS TRPDPVGGEA CDSERVTQGL GVVWSLILVR PNERKACLAI ALNCSVHYEE DIRAKAIRLV
0901: TNKLYHLRYI SEHVEQFATD RLLTAVNSET DFSQTAEGTK IEAKSQITST SDSPRSGNSE IHSQQDLQTS RDVSVLSFSD AQRLISLFFA LCKKKPSLLR
1001: LVFEVYGKAP KTVIQAFHRH MPILIRELGS SYIELLPIIS DPPKGSENLL TLVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS SLTKDEVLPI
1101: FPPLLNLPPD KFQLALAHIL QGSAHTGPAL TPAEVLIAIH EVVPDKDGPT LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF MRTVIQAIDA
1201: FPTLVDFVMG ILSKLVSREI WRLPKLWPGF LKCVSQTQPH SFPVLLELPM PQLESIMKKF PDLRPPLTAY ANQPTIRASL PNSAFSVLGL DNGQDSRSQM
1301: HP
0101: LVAKKAISVG TAFYCTILEE MAMQFHHHGK VDRWVGELWK WMVKFKDSVF STALEPGCVG VKVLALKFME TFILLFTPDA SDPENIFNEG SRQMFNISWL
0201: VGGHPILNSA MLMSEASRTF GILLDLIQAA GRLPGALTIT VVSCLAVVAR KRPVHYNSVL SVLLDFHPNL ESVKGCHAAS VQYSIRTALL GFLRCTSSPM
0301: IESRDKLLRA LRAMNAADVA DQVLRQVDKL IRNNERAARE KWSGKNNQAV NHQNSWDLSK KRIMPQGEDD TVNGEVAPKR LRHNNNMHLT PQGQISDSPH
0401: GTVSINGIAS GNHPSDSEPT PVEQMVSMIG ALLAEGDRGA ASLEILISKL HPDMLADIVI TSMKHLPSSP PTSTTSLATP ADIVVSSSIN PMRSPTRQPQ
0501: LPFDSTLPVG SSLSDVPSLN AGVDPRRDPR RDPRRMDPRR SNPSVGPTSL PVGEGKETVP VQIDISTLAS KPLSVPAAGA SGSVHPITVE DSQNKVMGSS
0601: VIRRIDQPDC REELLPIPKE YSYLSKGKSS LDVPLSPCRD DEGIRKTKFD LDPVSVPDFN QHSPSEAGPD FDLHPPVDSN ITAAEESYRE LAPVPSHVEL
0701: TKEQSNTVGK LALERIIESN RHVCGFDCNK IRMALIARLI AQIDAGNDVA AILKEHISVD HREFKGHELV LHVLYHLHSR ANLDTDESSS YASVYENFLI
0801: AVARSFLDTL PPFDKSFSRL FGEAPHLPDS AIKLLNELCS TRPDPVGGEA CDSERVTQGL GVVWSLILVR PNERKACLAI ALNCSVHYEE DIRAKAIRLV
0901: TNKLYHLRYI SEHVEQFATD RLLTAVNSET DFSQTAEGTK IEAKSQITST SDSPRSGNSE IHSQQDLQTS RDVSVLSFSD AQRLISLFFA LCKKKPSLLR
1001: LVFEVYGKAP KTVIQAFHRH MPILIRELGS SYIELLPIIS DPPKGSENLL TLVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS SLTKDEVLPI
1101: FPPLLNLPPD KFQLALAHIL QGSAHTGPAL TPAEVLIAIH EVVPDKDGPT LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF MRTVIQAIDA
1201: FPTLVDFVMG ILSKLVSREI WRLPKLWPGF LKCVSQTQPH SFPVLLELPM PQLESIMKKF PDLRPPLTAY ANQPTIRASL PNSAFSVLGL DNGQDSRSQM
1301: HP
0001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.