Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010931.1-P | Field mustard | plastid | 94.49 | 96.14 |
| CDY11788 | Canola | plastid | 95.09 | 94.25 |
| CDY27621 | Canola | plasma membrane, plastid | 81.99 | 84.64 |
| CDX84921 | Canola | plastid | 82.66 | 84.55 |
| AT1G27595.1 | Thale cress | nucleus | 82.14 | 83.32 |
| CDY11784 | Canola | cytosol | 13.39 | 75.0 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 8.41 | 69.75 |
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 10.71 | 59.5 |
| KRH52859 | Soybean | nucleus | 51.86 | 51.86 |
| KRH62152 | Soybean | plasma membrane | 51.04 | 51.08 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 40.1 | 50.52 |
| Solyc04g076910.2.1 | Tomato | nucleus | 38.62 | 45.13 |
| CDY04840 | Canola | plastid | 31.92 | 29.48 |
Protein Annotations
| EnsemblPlants:CDX90095 | EnsemblPlantsGene:GSBRNA2T00150611001 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Symplekin/Pta1_N | InterPro:Symplekin_C | PANTHER:PTHR15245 | PANTHER:PTHR15245:SF35 |
| PFAM:PF11935 | PFAM:PF12295 | ProteinID:CDX90095 | ProteinID:CDX90095.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI0004EEACEA | MapMan:16.2.1.2.9 | : | : | : | : |
Description
BnaA08g18890D
Coordinates
chrLK031862:+:33855..44980
Molecular Weight (calculated)
147159.0 Da
IEP (calculated)
6.646
GRAVY (calculated)
-0.055
Length
1344 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAATARTQA LSLLAAANNH GDLAVKLSSL RQVKEILLSL DPSLSAEIFP YLTELHSSRE ILVRKSLLEI IEEVGLRMMD HSYALVTVLL VLARDEDPIV
0101: AKKAVSVGTA FYCSILEEMA MQFHHRGKVD RWVGELWTWM VKFKDVVFST ALEPGSVGVK VLALKFMETF ILLFTPDASD PENFSNEGSR QMFNISWLAG
0201: GHPILNSVTL MSEANRTFGI LQDLVQSAGR LPGALTVAVV SCDPLGHAFR SKPEPFAILN IFCVSTGLLS DSSLSFSLAV VARKRPVHYN TVLSVLLDFH
0301: PNLVTVKGCH AASVQYSIRT ALLGFLRCTS SPMIESRDKL VRALRAMNAS DVADQAVRQV DKFIRNNERF ARENWSGKSN QAISHPNSWD LSKKRKMSQG
0401: EDDTINGEAA PKRLRHNTNM HLTPQVKISD SPHGPVSING ISPANHPSDS EPTPVEQMVS MIGALLAEGD RGAASLDILI SQLHPDMLAD IVITSMKHLP
0501: SSPPKLTTTL ATPADIVDSV CSPTLLPQLP FDPTLPAGLS FADVPSLNSA VADPRRDPRR DPRRIDPRRS NSSVAPTSLP VSEGKEPIPV QMDISSLPSN
0601: PLSVPAVTAG ASSSVHPTTI EHSQNKVVGS SVIKIIDQPD CREDLLTAPS ECVYPSKGIP VSPCRDDEGF RETKCRDDLA SIPDFDQHSP LESGPDFDLQ
0701: PPAASDATAE EESYRELASV PSYVELTTEQ SKTVGKLALE RIIESNRHVC GFACNKIRMP LIARLIAKIG AGNDVVAILR EHISVDHREF KGHELVLHVL
0801: YHLHSMANLD TDETSSYSAV YENFLITVAR LFLDALPASD KSFSRLFGEA PHLPDSAIKL LDELCSTRHD PTGREISDSE RVTQGLGAVW SLILVRPNER
0901: KAFLAIALNC SVHSEEDIRA KAIRLVTNKL YHLTYTSEHV EKFATDMLLT AVNSEADLSQ TGFIAEGIKT EAKSQITSTS DSPSSRTSDT HSQQDLQTSR
1001: DASVLSFAEA QRLISLFFAL CKKKPSLLRL VFEVYGKAPK TVIQAFHRHI PILIRELGSS YKELLHIISD PPKGSENLLT LVLQILTQEL APSSDLITTV
1101: KHLYETKLKD VSILIPLLSS LTKDEVLPIF PPLLNLPPEK FQLALAHILQ GSAHTGPALT PAEVLIAIHD VVPEKNGPPL KKITDACSAC FEQRTVFTQQ
1201: VLAKALGQMV NRTPLPLLFM RTVIQAIDAF PTLVDVVMEI LSKLVSRQIW RLPKLWPGFL KCVSQTQPHS FPVLLELPMP QLESIMKKFP DLRPSLTAYA
1301: NQPAIRASLP NSALSVLGLE NGQDSRSQMH PSDAASSIHG AALT
0101: AKKAVSVGTA FYCSILEEMA MQFHHRGKVD RWVGELWTWM VKFKDVVFST ALEPGSVGVK VLALKFMETF ILLFTPDASD PENFSNEGSR QMFNISWLAG
0201: GHPILNSVTL MSEANRTFGI LQDLVQSAGR LPGALTVAVV SCDPLGHAFR SKPEPFAILN IFCVSTGLLS DSSLSFSLAV VARKRPVHYN TVLSVLLDFH
0301: PNLVTVKGCH AASVQYSIRT ALLGFLRCTS SPMIESRDKL VRALRAMNAS DVADQAVRQV DKFIRNNERF ARENWSGKSN QAISHPNSWD LSKKRKMSQG
0401: EDDTINGEAA PKRLRHNTNM HLTPQVKISD SPHGPVSING ISPANHPSDS EPTPVEQMVS MIGALLAEGD RGAASLDILI SQLHPDMLAD IVITSMKHLP
0501: SSPPKLTTTL ATPADIVDSV CSPTLLPQLP FDPTLPAGLS FADVPSLNSA VADPRRDPRR DPRRIDPRRS NSSVAPTSLP VSEGKEPIPV QMDISSLPSN
0601: PLSVPAVTAG ASSSVHPTTI EHSQNKVVGS SVIKIIDQPD CREDLLTAPS ECVYPSKGIP VSPCRDDEGF RETKCRDDLA SIPDFDQHSP LESGPDFDLQ
0701: PPAASDATAE EESYRELASV PSYVELTTEQ SKTVGKLALE RIIESNRHVC GFACNKIRMP LIARLIAKIG AGNDVVAILR EHISVDHREF KGHELVLHVL
0801: YHLHSMANLD TDETSSYSAV YENFLITVAR LFLDALPASD KSFSRLFGEA PHLPDSAIKL LDELCSTRHD PTGREISDSE RVTQGLGAVW SLILVRPNER
0901: KAFLAIALNC SVHSEEDIRA KAIRLVTNKL YHLTYTSEHV EKFATDMLLT AVNSEADLSQ TGFIAEGIKT EAKSQITSTS DSPSSRTSDT HSQQDLQTSR
1001: DASVLSFAEA QRLISLFFAL CKKKPSLLRL VFEVYGKAPK TVIQAFHRHI PILIRELGSS YKELLHIISD PPKGSENLLT LVLQILTQEL APSSDLITTV
1101: KHLYETKLKD VSILIPLLSS LTKDEVLPIF PPLLNLPPEK FQLALAHILQ GSAHTGPALT PAEVLIAIHD VVPEKNGPPL KKITDACSAC FEQRTVFTQQ
1201: VLAKALGQMV NRTPLPLLFM RTVIQAIDAF PTLVDVVMEI LSKLVSRQIW RLPKLWPGFL KCVSQTQPHS FPVLLELPMP QLESIMKKFP DLRPSLTAYA
1301: NQPAIRASLP NSALSVLGLE NGQDSRSQMH PSDAASSIHG AALT
0001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.