Factsheet for VIT_18s0001g08130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G076270.4	Barley	cytosol	19.83	39.02
KRH52859	Soybean	nucleus	66.53	11.98
KRH62152	Soybean	plasma membrane	64.88	11.69
CDY27621	Canola	plasma membrane, plastid	60.33	11.21
CDX84921	Canola	plastid	60.33	11.11
AT1G27595.1	Thale cress	nucleus	60.74	11.09
Bra032834.1-P	Field mustard	plasma membrane, plastid	61.16	11.0
Bra010931.1-P	Field mustard	plastid	59.5	10.9
CDX90095	Canola	plastid	59.5	10.71
CDY11788	Canola	plastid	59.09	10.55
VIT_08s0105g00330.t01	Wine grape	cytosol	33.47	6.08
TraesCS3A01G259200.1	Wheat	cytosol	31.82	5.98
TraesCS3D01G259300.1	Wheat	cytosol	31.82	5.96
TraesCS3B01G292200.1	Wheat	cytosol	31.82	5.96
Zm00001d043775_P006	Maize	cytosol	30.99	5.6
KXG31070	Sorghum	plastid	28.51	5.46
OQU87378	Sorghum	cytosol, plasma membrane	28.51	5.43
GSMUA_Achr8P31930_001	Banana	extracellular, plasma membrane	16.94	5.12
Solyc04g076910.2.1	Tomato	nucleus	5.37	1.13
HORVU3Hr1G064850.4	Barley	extracellular, plasma membrane	1.65	0.37
HORVU6Hr1G076280.1	Barley	cytosol	0.0	0.0
Os01t0694300-01	Rice	extracellular, peroxisome	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, plasma membrane	0.0	0.0
VIT_18s0001g08140.t01	Wine grape	mitochondrion	0.0	0.0
CDY11784	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100260884	wikigene:100260884	EntrezGene:100266091	MapMan:16.2.1.2.9	EMBL:AM458227
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN63444	ProteinID:CAN63444.1	ProteinID:CBI19318	ProteinID:CBI19318.3
UniProt:E0CNU0	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	InterPro:IPR011989	EntrezGene:LOC100260884
wikigene:LOC100260884	EntrezGene:LOC100266091	PFAM:PF11935	PANTHER:PTHR15245	PANTHER:PTHR15245:SF20	SUPFAM:SSF48371
InterPro:Symplekin/Pta1	InterPro:Symplekin/Pta1_N	UniParc:UPI0001BE16F6	ArrayExpress:VIT_18s0001g08130	EnsemblPlantsGene:VIT_18s0001g08130	EnsemblPlants:VIT_18s0001g08130.t01
unigene:Vvi.1744	RefSeq:XP_002283639	RefSeq:XP_002283639.1	RefSeq:XP_010664456.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:6574920..6580383

Molecular Weight (calculated)

26324.1 Da

IEP (calculated)

6.154

GRAVY (calculated)

0.410

Length

242 amino acids

Sequence
(BLAST)

001: MAGASRDQAL ALLAAANNHG DLAVKLSSLR QAKDILLAVH PSFAAELFPY LVELQSSPET LVRKSLIEAI EEIGLKAMEH SSILVSVLLV FLRDGDSIIA
101: KQSIVSGTNF FCSVLEELAL QFHRHGKVER WLEELWVWMV KLKDAVLAIA LGPGPFGVKI LAMKFLETYV LHFTSDANDF EKSSIEGSGR AFNISWVVGG
201: HPVLDPASLM SDANRIIGVL LTLLQSASSL SGCLTITVVN WK

Best Arabidopsis Sequence Match ( AT1G27595.2 )
(BLAST)

001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISWYVSES IPLCLCRYFS LYSS

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.