Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 39.02 | 19.83 |
| Solyc04g076900.1.1 | Tomato | nucleus | 33.33 | 16.6 |
| TraesCS3A01G259200.1 | Wheat | cytosol | 91.87 | 8.77 |
| TraesCS3D01G259300.1 | Wheat | cytosol | 91.06 | 8.66 |
| TraesCS3B01G292200.1 | Wheat | cytosol | 91.06 | 8.66 |
| KXG31070 | Sorghum | plastid | 64.23 | 6.25 |
| OQU87378 | Sorghum | cytosol, plasma membrane | 64.23 | 6.22 |
| Zm00001d043775_P006 | Maize | cytosol | 63.41 | 5.83 |
| Bra010931.1-P | Field mustard | plastid | 45.53 | 4.24 |
| AT1G27595.1 | Thale cress | nucleus | 45.53 | 4.23 |
| KRH52859 | Soybean | nucleus | 40.65 | 3.72 |
| Bra032834.1-P | Field mustard | plasma membrane, plastid | 40.65 | 3.71 |
| KRH62152 | Soybean | plasma membrane | 39.02 | 3.57 |
| HORVU2Hr1G013790.2 | Barley | cytosol | 29.27 | 3.01 |
| Os01t0694300-01 | Rice | extracellular, peroxisome | 3.25 | 2.84 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 1.63 | 1.23 |
| Solyc04g076910.2.1 | Tomato | nucleus | 9.76 | 1.04 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, plasma membrane | 0.81 | 0.56 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 4.07 | 0.47 |
| HORVU3Hr1G064850.4 | Barley | extracellular, plasma membrane | 4.07 | 0.46 |
| HORVU6Hr1G076280.1 | Barley | cytosol | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G076270.4 | EnsemblPlantsGene:HORVU6Hr1G076270 | Gene3D:1.25.10.10 | InterPro:ARM-like | InterPro:IPR011989 | InterPro:Symplekin/Pta1 |
| InterPro:Symplekin/Pta1_N | PANTHER:PTHR15245 | PANTHER:PTHR15245:SF20 | PFAM:PF11935 | UniParc:UPI000B47C300 | UniProt:A0A287URA9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:525237396..525301527
Molecular Weight (calculated)
13974.1 Da
IEP (calculated)
6.506
GRAVY (calculated)
0.105
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQVNECGR VDAWLEEMWA WMNQFKDAVC VMMREPVPVA SKLLAVKFIE TWILCLTPQP NSDRMQPIEG KNRRFDASRL AKFHPSLDPV VLEADANRAF
101: IILVDIVQSA FAHRGSFLVG TIN
101: IILVDIVQSA FAHRGSFLVG TIN
001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISWYVSES IPLCLCRYFS LYSS
101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISWYVSES IPLCLCRYFS LYSS
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.