Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G259300.1 | Wheat | cytosol | 98.53 | 98.53 |
| TraesCS3A01G259200.1 | Wheat | cytosol | 97.29 | 97.67 |
| HORVU6Hr1G076270.4 | Barley | cytosol | 8.66 | 91.06 |
| HORVU6Hr1G076280.1 | Barley | cytosol | 12.45 | 89.44 |
| HORVU3Hr1G064850.4 | Barley | extracellular, plasma membrane | 75.1 | 89.0 |
| Os01t0694300-01 | Rice | extracellular, peroxisome | 9.2 | 84.4 |
| KXG31070 | Sorghum | plastid | 69.91 | 71.58 |
| OQU87378 | Sorghum | cytosol, plasma membrane | 68.6 | 69.84 |
| Zm00001d043775_P006 | Maize | cytosol | 71.62 | 69.16 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, plasma membrane | 8.66 | 63.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.67 | 54.11 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 36.19 | 43.86 |
| Solyc04g076910.2.1 | Tomato | nucleus | 37.9 | 42.61 |
| KRH62152 | Soybean | plasma membrane | 42.38 | 40.8 |
| KRH52859 | Soybean | nucleus | 42.38 | 40.77 |
| AT1G27595.1 | Thale cress | nucleus | 41.45 | 40.45 |
| Bra010931.1-P | Field mustard | plastid | 39.68 | 38.83 |
| Bra032834.1-P | Field mustard | plasma membrane, plastid | 39.37 | 37.82 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 4.72 | 37.65 |
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 5.96 | 31.82 |
| TraesCS2B01G098800.3 | Wheat | cytosol, plastid | 30.63 | 31.35 |
| Solyc04g076900.1.1 | Tomato | nucleus | 5.57 | 29.15 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G292200.1 | EnsemblPlantsGene:TraesCS3B01G292200 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Symplekin/Pta1 | InterPro:Symplekin/Pta1_N | InterPro:Symplekin_C | PANTHER:PTHR15245 |
| PANTHER:PTHR15245:SF20 | PFAM:PF11935 | PFAM:PF12295 | SEG:seg | SUPFAM:SSF48371 | MapMan:16.2.1.2.9 |
Description
No Description!
Coordinates
chr3B:+:470597832..470613011
Molecular Weight (calculated)
142444.0 Da
IEP (calculated)
5.500
GRAVY (calculated)
-0.251
Length
1293 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEFEADGARW PEQRGGAAEA PPPPQERGEV PSPRFDSSRA LRLLTELDSN VTEDLVVLMP NLLSFLKHDD PAVVKQSIAS GTNLFAAVLE EMALQVNECG
0101: RVDAWLEEMW AWMNQFKDAV CVMMREPVPI ASKLLAVKFI ETWILCLTPQ SNSDRMQPIE GKSRRFDASR LAKFHPSLDP VVLEADANRT FIILVDIVQS
0201: AYAHRGSFLV GTINSLAAIG KSRPVYYDRA LSVLFGFDPN LETSKGAHSG SLKYSLKTAF LGFLRSPCQA MLESKDVLVR RLRALSPGEA TEQIIRQAEK
0301: MSRNIERACR TNKDEHPTWE MSYGDVNRKN SAGRSSDTLA MAEGMAKRAR FDSSAASNPP VQGIPDYSEM QIENDGIMGH SSDPSLLSTD VSPVEKMIEM
0401: IGALLAEGER GAESLGILIS SVESDVMADI VIETMKHLPE APFPLARNKS VPQPNLQSPS NPSTENLPGN LHSLPFTAQS VPSADGAGIS PPEVLVMPGV
0501: SDSKRDPRRD PRRLDPRRTV APAATSPMQM TVEITSVHQT NSLSNTLSPL HGKIEKCADY SADPPNNEDE EHPSSKLHQP MDEERSEFLD DSTEPDTKFE
0601: VYPPVEARFP SSDVNEEMNN PLTPEAISNN GSDSTDLEVG HFSPVSKTST PEDTNHELPL LPSHLELSDS EKISLHKLAI GRIIDDYKKN SINSRFSLLA
0701: HLVAQSTADD NIMDLIQTHI ILHNHDQKGH ELAMHVLYQL QCVNVADAPG SSISTSEHYE KFFISLAKLL IDVLPASDKS FSKLLCDAPC LPESLFRFLE
0801: GLCMSQGNNQ QTKDSEGDRV TQGLGTVWSL ILGRPPLRQA CLDIVLKCAI HSQDEVRGKA VRLVAKKLYD LTYASEKVEQ FATDSLLAIA NKHGVSTDVN
0901: FTTSKESTSE VEVSNQEASV SGSQISDAGP SESGSTKTAL ISPKQLAISV SEAKRHTSLF FALCTKRPTL LRQLFNVYGG SPKVVKQCIH WHIPTLVRNL
1001: GSSCPEMLDI IHSPPEGSEE LVTMILQTLT EESNPSANLV VAVKHLYETK LKDASILIPL LSSFPKEEVL PIFPRLVDLS PDRFQDALAR ILQGSAHTGP
1101: ALTPAEVLIA IHDINPEKDK VPLKKVIDAC TACFEQRTVF TQQVLEKALN KLVDNVPIPL LFMRTVIQAL DAFPALVDFV MEILSRLVNK QIWKMPKLWV
1201: GFLKLAYQTQ PRSFDVLLQL PPPQLEVALN KYPNLRPHLS SFVNRQNLHN KLPRHTLNIL GFVNEPQQAP MPFAPAALQT ADTTSSLPGA NIM
0101: RVDAWLEEMW AWMNQFKDAV CVMMREPVPI ASKLLAVKFI ETWILCLTPQ SNSDRMQPIE GKSRRFDASR LAKFHPSLDP VVLEADANRT FIILVDIVQS
0201: AYAHRGSFLV GTINSLAAIG KSRPVYYDRA LSVLFGFDPN LETSKGAHSG SLKYSLKTAF LGFLRSPCQA MLESKDVLVR RLRALSPGEA TEQIIRQAEK
0301: MSRNIERACR TNKDEHPTWE MSYGDVNRKN SAGRSSDTLA MAEGMAKRAR FDSSAASNPP VQGIPDYSEM QIENDGIMGH SSDPSLLSTD VSPVEKMIEM
0401: IGALLAEGER GAESLGILIS SVESDVMADI VIETMKHLPE APFPLARNKS VPQPNLQSPS NPSTENLPGN LHSLPFTAQS VPSADGAGIS PPEVLVMPGV
0501: SDSKRDPRRD PRRLDPRRTV APAATSPMQM TVEITSVHQT NSLSNTLSPL HGKIEKCADY SADPPNNEDE EHPSSKLHQP MDEERSEFLD DSTEPDTKFE
0601: VYPPVEARFP SSDVNEEMNN PLTPEAISNN GSDSTDLEVG HFSPVSKTST PEDTNHELPL LPSHLELSDS EKISLHKLAI GRIIDDYKKN SINSRFSLLA
0701: HLVAQSTADD NIMDLIQTHI ILHNHDQKGH ELAMHVLYQL QCVNVADAPG SSISTSEHYE KFFISLAKLL IDVLPASDKS FSKLLCDAPC LPESLFRFLE
0801: GLCMSQGNNQ QTKDSEGDRV TQGLGTVWSL ILGRPPLRQA CLDIVLKCAI HSQDEVRGKA VRLVAKKLYD LTYASEKVEQ FATDSLLAIA NKHGVSTDVN
0901: FTTSKESTSE VEVSNQEASV SGSQISDAGP SESGSTKTAL ISPKQLAISV SEAKRHTSLF FALCTKRPTL LRQLFNVYGG SPKVVKQCIH WHIPTLVRNL
1001: GSSCPEMLDI IHSPPEGSEE LVTMILQTLT EESNPSANLV VAVKHLYETK LKDASILIPL LSSFPKEEVL PIFPRLVDLS PDRFQDALAR ILQGSAHTGP
1101: ALTPAEVLIA IHDINPEKDK VPLKKVIDAC TACFEQRTVF TQQVLEKALN KLVDNVPIPL LFMRTVIQAL DAFPALVDFV MEILSRLVNK QIWKMPKLWV
1201: GFLKLAYQTQ PRSFDVLLQL PPPQLEVALN KYPNLRPHLS SFVNRQNLHN KLPRHTLNIL GFVNEPQQAP MPFAPAALQT ADTTSSLPGA NIM
0001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.