Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31070 | Sorghum | plastid | 92.52 | 93.03 |
| Zm00001d043775_P006 | Maize | cytosol | 90.31 | 85.66 |
| Os01t0694300-01 | Rice | extracellular, peroxisome | 9.37 | 84.4 |
| HORVU6Hr1G076280.1 | Barley | cytosol | 10.16 | 71.67 |
| TraesCS3D01G259300.1 | Wheat | cytosol | 70.16 | 68.91 |
| TraesCS3B01G292200.1 | Wheat | cytosol | 69.84 | 68.6 |
| TraesCS3A01G259200.1 | Wheat | cytosol | 69.53 | 68.56 |
| HORVU3Hr1G064850.4 | Barley | extracellular, plasma membrane | 58.11 | 67.64 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, plasma membrane | 9.06 | 64.97 |
| HORVU6Hr1G076270.4 | Barley | cytosol | 6.22 | 64.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 8.74 | 48.05 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 34.8 | 41.42 |
| Solyc04g076910.2.1 | Tomato | nucleus | 36.93 | 40.78 |
| KRH62152 | Soybean | plasma membrane | 40.47 | 38.27 |
| AT1G27595.1 | Thale cress | nucleus | 39.61 | 37.96 |
| KRH52859 | Soybean | nucleus | 39.92 | 37.72 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 4.72 | 37.04 |
| Bra010931.1-P | Field mustard | plastid | 37.87 | 36.41 |
| Bra032834.1-P | Field mustard | plasma membrane, plastid | 38.27 | 36.11 |
| KXG37042 | Sorghum | cytosol | 30.63 | 31.3 |
| Solyc04g076900.1.1 | Tomato | nucleus | 5.59 | 28.74 |
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 5.43 | 28.51 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:16.2.1.2.9 | UniProt:A0A1W0VZ12 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | InterPro:IPR011989 | EnsemblPlants:OQU87378 | ProteinID:OQU87378 | ProteinID:OQU87378.1 |
| ProteinID:OQU87380.1 | PFAM:PF11935 | PFAM:PF12295 | PANTHER:PTHR15245 | PANTHER:PTHR15245:SF20 | EnsemblPlantsGene:SORBI_3003G266100 |
| SUPFAM:SSF48371 | InterPro:Symplekin/Pta1 | InterPro:Symplekin/Pta1_N | InterPro:Symplekin_C | UniParc:UPI0009DC8B1C | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:60293471..60320933
Molecular Weight (calculated)
140777.0 Da
IEP (calculated)
5.499
GRAVY (calculated)
-0.165
Length
1270 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADLVMAAVM ANPVTTTAAA MRLLRELGRN VTEDLVVLMP NLLSFLKHDD PAVVKQSIAS GTTLCAAVLE EMTLQVNKCG KLETWLEDVW AWMKQFKDAV
0101: CGVMNEPGPI ATKLLALKFI ETWILCWTPQ ANSDQTQPTE GKNWRFHTSR LSQFHRSLDP AVLEADAHRA LQLLLDIIRT AYAHRGSFLV GTINSLAAVV
0201: KIRPIYYDRV LPVLLDFDPG LETAKGAHSA SLWYAVRAAF WGFLRSPHQA MIESKDILVR RLRVLSPGEA MEQNIRQVEK MSRNIERASR AIKDESTSWE
0301: MPYGDINWKK PAARSSDILT TSDGIAKRAR FDMSATSNLP VLGSSDYSDM QADDGCSVGH SSDPSILNNN VSPVEKMIEM IGALLAEGER GAESLGILVS
0401: TVEADVMADI VIETMKHLLE ASFHLATNNG VQQLNLKYSS GLLTQNLPAN SDSALSAAQS TPTADGVSMS PSEAFVMTSV HDAKRDPRRD PRRLDPWRIV
0501: SPSALNSIQV KMETNSVHQT DNLSNTLYSN SGKSENYSDY SGDLQKNEDE QNSASQPNQT IAKDKLELLD VATEPEPTSE VEADIRIHSS DVEDMVKPMS
0601: SEVISLDESD SMDLEVDPFL PAPEASTPED TNHDLPVITS HLELSEKGKI SINKLAIGQI LDDYKKNSLN ARFSLLAHLI AQSAADDNIM DLIQRNIIFH
0701: SHDQKGYELA MHVLYQLQSI SVANSPESST ATSKHYEKFF ISLARSLIDS LPASDKSFSK LLCDAPYLPE SIFRLLEDLC LSEDNSQQLK DGDGDRVTQG
0801: LGTVWSLILV RPPLRHVCLD IALKCAAHSQ DEVRGRAVRL VSKRLYDLPY ATKKIEQFAI ESLVGVADEH TVDTDINLKS LKESTAEIEV GGQGTSVTGS
0901: QIPDTEFSEN EPFKTSSISP KQSAVSVSEA RRRTSLFFAL CTKRASLLQH LFNVYRMSPK VVKQCIHWHM PNLIRNLGPS CPEMLNIIHN PPEGSEHLIT
1001: LTLQTLTEDS NPSADLVAAV KQLYNTKLKD ASILIPLLPS FPKEEVLAIF PRLVDLPLQR FQDALARILQ GTAHIGPALT PAEVLIAIHD INPEKDKVAL
1101: KKVMDACTAC FEQRTVFTQQ VLEKSLNQLV DRIPIPLLFM RTVIQALDAF PALVDFVMGI LSRLVDKQIW KMPKLWVGFL KLSFQTQPRS FDVLLQLPPP
1201: QLEFMLNKYP NLRTPLSSFV NQRNMHTTLP RQILNILGFF SEPQQAPMTF VPATLQTADA TTSLPGATLM
0101: CGVMNEPGPI ATKLLALKFI ETWILCWTPQ ANSDQTQPTE GKNWRFHTSR LSQFHRSLDP AVLEADAHRA LQLLLDIIRT AYAHRGSFLV GTINSLAAVV
0201: KIRPIYYDRV LPVLLDFDPG LETAKGAHSA SLWYAVRAAF WGFLRSPHQA MIESKDILVR RLRVLSPGEA MEQNIRQVEK MSRNIERASR AIKDESTSWE
0301: MPYGDINWKK PAARSSDILT TSDGIAKRAR FDMSATSNLP VLGSSDYSDM QADDGCSVGH SSDPSILNNN VSPVEKMIEM IGALLAEGER GAESLGILVS
0401: TVEADVMADI VIETMKHLLE ASFHLATNNG VQQLNLKYSS GLLTQNLPAN SDSALSAAQS TPTADGVSMS PSEAFVMTSV HDAKRDPRRD PRRLDPWRIV
0501: SPSALNSIQV KMETNSVHQT DNLSNTLYSN SGKSENYSDY SGDLQKNEDE QNSASQPNQT IAKDKLELLD VATEPEPTSE VEADIRIHSS DVEDMVKPMS
0601: SEVISLDESD SMDLEVDPFL PAPEASTPED TNHDLPVITS HLELSEKGKI SINKLAIGQI LDDYKKNSLN ARFSLLAHLI AQSAADDNIM DLIQRNIIFH
0701: SHDQKGYELA MHVLYQLQSI SVANSPESST ATSKHYEKFF ISLARSLIDS LPASDKSFSK LLCDAPYLPE SIFRLLEDLC LSEDNSQQLK DGDGDRVTQG
0801: LGTVWSLILV RPPLRHVCLD IALKCAAHSQ DEVRGRAVRL VSKRLYDLPY ATKKIEQFAI ESLVGVADEH TVDTDINLKS LKESTAEIEV GGQGTSVTGS
0901: QIPDTEFSEN EPFKTSSISP KQSAVSVSEA RRRTSLFFAL CTKRASLLQH LFNVYRMSPK VVKQCIHWHM PNLIRNLGPS CPEMLNIIHN PPEGSEHLIT
1001: LTLQTLTEDS NPSADLVAAV KQLYNTKLKD ASILIPLLPS FPKEEVLAIF PRLVDLPLQR FQDALARILQ GTAHIGPALT PAEVLIAIHD INPEKDKVAL
1101: KKVMDACTAC FEQRTVFTQQ VLEKSLNQLV DRIPIPLLFM RTVIQALDAF PALVDFVMGI LSRLVDKQIW KMPKLWVGFL KLSFQTQPRS FDVLLQLPPP
1201: QLEFMLNKYP NLRTPLSSFV NQRNMHTTLP RQILNILGFF SEPQQAPMTF VPATLQTADA TTSLPGATLM
0001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.