Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G076280.1 | Barley | cytosol | 15.31 | 92.78 |
| TraesCS3D01G259300.1 | Wheat | cytosol | 89.18 | 75.25 |
| TraesCS3B01G292200.1 | Wheat | cytosol | 89.0 | 75.1 |
| TraesCS3A01G259200.1 | Wheat | cytosol | 88.54 | 75.0 |
| Os01t0694300-01 | Rice | extracellular, peroxisome | 8.43 | 65.25 |
| KXG31070 | Sorghum | plastid | 69.11 | 59.7 |
| OQU87378 | Sorghum | cytosol, plasma membrane | 67.64 | 58.11 |
| Zm00001d043775_P006 | Maize | cytosol | 69.02 | 56.24 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, plasma membrane | 8.8 | 54.24 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.37 | 53.68 |
| VIT_18s0001g08140.t01 | Wine grape | mitochondrion | 41.7 | 42.64 |
| Solyc04g076910.2.1 | Tomato | nucleus | 43.45 | 41.22 |
| KRH62152 | Soybean | plasma membrane | 42.99 | 34.92 |
| KRH52859 | Soybean | nucleus | 42.8 | 34.75 |
| AT1G27595.1 | Thale cress | nucleus | 41.89 | 34.49 |
| Bra010931.1-P | Field mustard | plastid | 40.51 | 33.46 |
| Bra032834.1-P | Field mustard | plasma membrane, plastid | 40.79 | 33.06 |
| CDY11783 | Canola | endoplasmic reticulum, plasma membrane | 4.67 | 31.48 |
| HORVU2Hr1G013790.2 | Barley | cytosol | 29.7 | 27.09 |
| HORVU6Hr1G076270.4 | Barley | cytosol | 0.46 | 4.07 |
| VIT_18s0001g08130.t01 | Wine grape | extracellular, plasma membrane, plastid | 0.37 | 1.65 |
| Solyc04g076900.1.1 | Tomato | nucleus | 0.18 | 0.81 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G064850.4 | EnsemblPlantsGene:HORVU3Hr1G064850 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Symplekin/Pta1 | InterPro:Symplekin/Pta1_N | InterPro:Symplekin_C | PANTHER:PTHR15245 |
| PANTHER:PTHR15245:SF20 | PFAM:PF11935 | PFAM:PF12295 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF48371 |
| UniParc:UPI000B4878AC | UniProt:A0A287LDG5 | MapMan:16.2.1.2.9 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:495132647..495150247
Molecular Weight (calculated)
120328.0 Da
IEP (calculated)
5.785
GRAVY (calculated)
-0.233
Length
1091 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQTGLSSSLW ILCNQLLLIE VSVPSWHLLT SLAAIGKSRP VYYDRALSVL FGFDPNLETS KGAHSASLKY SLKTAFLGFL RSPCQAMLES KDVLVKRLRA
0101: LSPGEATEQV IRQAEKMSRN IERACRTNKD EHPTWEMSYG DVNRKNPAGR SSDTLAMAEG IAKRARFESS AASNQLVQGI PDYSDMQIEN DANMGHSSDP
0201: SLLSTDVSPV EKMIEMIGAL LAEGERGAES LGILISSVES DVMADIVIET MKHLPEAPFP LARNKSVPQP NLQPPSNPLP ENLPGNLHSL PFTAQSVPSA
0301: DGTGISPPEV LVMPGVSDSK RDPRRDPRRL DPRRTVAPAA TSLIQMTVEM TSVHQTNSLS NTPSPLPGKI EKCADYSGDP PKIEVEEHPS SKPHQAMDKG
0401: RSELLDDATE LGTNFEVHPP VEAEFPSSDV NEEMNNPLTP EAISNNGYDS MDFDVDPFSP VSKTSTPEDT NHELPLLPSH LELIDSEKIS LHILAVRRII
0501: DDYKKNSLNT RFSLLAHLVA QSTADDNIMV LIQNHIIFHY HDQKGHELAM HVLYQLYCAN VADAPESSIS TSEHYEKFFI SLARSLIDSL PASDKSFSKL
0601: LCDAPCLPES LFRFLEGLCM SQGNNQQTKD NEGDRVTQGL GTVWSLILVR PPLRQACLDI VLKCAIHSQD EVRGKAVRLV AKKLYDLTYA SEKVEQFATD
0701: SLLAIANKHG VETDVNLTTS KESTSEVEVS SQEASVSGSQ ISDAGPSESG STMTSLVSPK QSVISVSEAK RHTSLFFALC TKRPTLLQQL FNVYGGSPKV
0801: VKQCIHWHMP TLVRNLGSSC PEMLDIIHNP PDGSEELVTM ILQTLTEESN PSANLVVAVK HLYETKLKDA SILIPLLSSF PKEEVLPIFP RLVDLPPDRF
0901: QDALARILQG SAHTGPALTP AEVLIAIHDI NPEKDKVPLK KVIDACTACF EQRTVFTQQV LEKALNKLVD DVPIPLLFMR TVIQALDAFP ALVDFVMGLL
1001: SRLVNKQIWK MPKLWVGFLK LAYQTQPRSF DVLLQLPPPQ LEVALNKYPN LRPHLSSFVN RQNYHNKLPR YFPLTLTAHS NSGTLVNLST E
0101: LSPGEATEQV IRQAEKMSRN IERACRTNKD EHPTWEMSYG DVNRKNPAGR SSDTLAMAEG IAKRARFESS AASNQLVQGI PDYSDMQIEN DANMGHSSDP
0201: SLLSTDVSPV EKMIEMIGAL LAEGERGAES LGILISSVES DVMADIVIET MKHLPEAPFP LARNKSVPQP NLQPPSNPLP ENLPGNLHSL PFTAQSVPSA
0301: DGTGISPPEV LVMPGVSDSK RDPRRDPRRL DPRRTVAPAA TSLIQMTVEM TSVHQTNSLS NTPSPLPGKI EKCADYSGDP PKIEVEEHPS SKPHQAMDKG
0401: RSELLDDATE LGTNFEVHPP VEAEFPSSDV NEEMNNPLTP EAISNNGYDS MDFDVDPFSP VSKTSTPEDT NHELPLLPSH LELIDSEKIS LHILAVRRII
0501: DDYKKNSLNT RFSLLAHLVA QSTADDNIMV LIQNHIIFHY HDQKGHELAM HVLYQLYCAN VADAPESSIS TSEHYEKFFI SLARSLIDSL PASDKSFSKL
0601: LCDAPCLPES LFRFLEGLCM SQGNNQQTKD NEGDRVTQGL GTVWSLILVR PPLRQACLDI VLKCAIHSQD EVRGKAVRLV AKKLYDLTYA SEKVEQFATD
0701: SLLAIANKHG VETDVNLTTS KESTSEVEVS SQEASVSGSQ ISDAGPSESG STMTSLVSPK QSVISVSEAK RHTSLFFALC TKRPTLLQQL FNVYGGSPKV
0801: VKQCIHWHMP TLVRNLGSSC PEMLDIIHNP PDGSEELVTM ILQTLTEESN PSANLVVAVK HLYETKLKDA SILIPLLSSF PKEEVLPIFP RLVDLPPDRF
0901: QDALARILQG SAHTGPALTP AEVLIAIHDI NPEKDKVPLK KVIDACTACF EQRTVFTQQV LEKALNKLVD DVPIPLLFMR TVIQALDAFP ALVDFVMGLL
1001: SRLVNKQIWK MPKLWVGFLK LAYQTQPRSF DVLLQLPPPQ LEVALNKYPN LRPHLSSFVN RQNYHNKLPR YFPLTLTAHS NSGTLVNLST E
0001: MAAPAAATAR AQALSLLAAA NNHGDLAVKL SSLRQVKEIL LSLEPSLSAE IFPYLAELHL SREILVRKSL IEIIEEVGLR MLDHSYVLVS VLLVLSRDED
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
0101: PTVAKKSISV GTTFFCTILE EMAMQFHHRG KVDRWCGELW TWMVKFKDTV FATALEPGCV GVKVLALKFM ETFILLFTPD ASDPEKASSE GSRHMFNISW
0201: LAGGHPILNP ATLMSEANRT FGILVDFIQS ANRLPGALTI SVISCLAVVA RKRPVHYNTV LSVLLEFHPN LETVKGCHAA SVQYSIRTAF LGFLRCTFSP
0301: IIESRDKLLR AFRAMNAADV ADQVLRQVDK LVRNNERAAR ENWSGKNNQV ISHQNSWDLS KKRIMPQGED DTINGEVAPK RVRHNTNMHL TQQVQTNESL
0401: QGPVSINGIS SGNHLSDSEL TPVEQMVSMI GALLAEGDRG AASLEILISK LHPDMLADIV ITSMKHLPST PPTLASSVAT PADIVVSSST NTVHSPTPPA
0501: QLPFDPILPA GSSFSEVPSL SSSVADPRRD PRRDPRRMDP RRLNSSVGPT SLPVGEGKES VPVQKDISTL LSKPVSVSAV TPGATGSVHS TAVELSQNKM
0601: MGSSGIRIID PPECREDLLT VPNECSYPSK EISSLDVPLS PCRDDEGIRE TKYSVPDLDM LSVPDFDQHS PSASVPDFDQ DPPAASDITA PEESYRELDP
0701: VPSYVELTTE QSKTVGKLAI ERIIESNRHV FGFDCNKIRM ALIARLIARI DAGSDVATIL RELISVDHRE FKGHDLVLHV LYHLHSMAIL DTDESSFYAT
0801: VYENFLISVA RSFLDALPAS DKSFSRLFGE APHLPDSAIN LLDELCSTRH DPVGKEVCDS ERVTQGLGAV WSLILVRPNE RKACLAIALK CSVHSEEEVR
0901: AKAIRLVTNK LYHLTYIAEH VEQFATDMLL TAVNSETNLS QTASTAEGIK MEAKSQITLT TESLGSGNSD IPSQQDLQTS REVSVISISE AQRLISLFFA
1001: LCKKKPSLLR LVFEVYGRAP KMVNQAFHRH IPILIRELGS SYTELLQIIS DPPKGSENLL TYVLQILTQE LAPSLDLIAT VKHLYETKLK DVSILIPLLS
1101: SLTKDEVLPI FPPLLNLPPE KFQLALAHIL QGSAHTGPAL TPAEVLIAIH DIVPEKDGPP LKKITDACSA CFEQRTVFTQ QVLAKALGQM VDRTPLPLLF
1201: MRTVIQAIDA FPTLVDFVME ILSKLVRKQI WRLPKLWPGF LKCVSQTKPH SFPVLLELPV PQLESIMKKF PDLRPSLTAY ANQPTIRSSL PNSALSVLGL
1301: DNGQDSRSQM HPSDATSSIH GAALT
Arabidopsis Description
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - /.../teria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). [Source:TAIR;Acc:AT1G27595]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.