CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030617_P001	Maize	nucleus	89.81	93.38
Zm00001d041604_P001	Maize	nucleus	85.99	88.82
TraesCS5A01G088300.1	Wheat	nucleus	82.17	82.17
TraesCS5B01G094300.1	Wheat	nucleus	82.17	82.17
HORVU2Hr1G021080.1	Barley	nucleus	82.17	81.65
HORVU5Hr1G023000.1	Barley	nucleus	82.17	81.65
TraesCS5D01G100700.1	Wheat	nucleus	81.53	81.53
EES17653	Sorghum	nucleus	45.22	48.3
GSMUA_Achr5P27130_001	Banana	nucleus	43.95	47.59
GSMUA_Achr3P24300_001	Banana	nucleus	35.67	41.18
EES06238	Sorghum	plastid	36.31	33.33
EES00878	Sorghum	nucleus, plastid	31.85	32.68
GSMUA_Achr11P...	Banana	mitochondrion	37.58	32.42
EER96530	Sorghum	nucleus	29.94	29.56
EES14897	Sorghum	nucleus, plastid	27.39	24.43

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8068838	UniProt:C5YPS7	ncoils:Coil	EnsemblPlants:EES16161
ProteinID:EES16161	ProteinID:EES16161.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF126	SMART:SM00338	EnsemblPlantsGene:SORBI_3008G129300
SUPFAM:SSF57959	unigene:Sbi.15328	UniParc:UPI0001A8851F	RefSeq:XP_002442323.1	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:55531245..55532919

Molecular Weight (calculated)

17278.3 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.648

Length

157 amino acids

Sequence
(BLAST)

001: MSSSSLSPAG TGRTSGSSDG DSASAADTHR REKRRLSNRE SARRSRLRKQ QHLDELVQEV ARLQAENARV AARAADIASQ YARVDQENTV LRARAAELGD
101: RLRSVNDVLR VVEDFSGVAM DIQDEMMPAD DPLLRPWQLP GYPAAAMPIG APHMLHY

Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)

001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC

Arabidopsis Description

BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.