CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035440_P001	Maize	nucleus	80.95	88.15
Os05t0129300-02	Rice	nucleus	70.75	70.27
TraesCS1D01G075500.1	Wheat	nucleus	65.99	64.67
TraesCS1B01G091500.1	Wheat	nucleus	65.31	64.0
HORVU1Hr1G015660.1	Barley	nucleus	65.99	63.82
EES16161	Sorghum	nucleus	48.3	45.22
GSMUA_Achr5P27130_001	Banana	nucleus	37.41	37.93
GSMUA_Achr3P24300_001	Banana	nucleus	34.69	37.5
EES00878	Sorghum	nucleus, plastid	35.37	33.99
GSMUA_Achr11P...	Banana	mitochondrion	35.37	28.57
EES06238	Sorghum	plastid	31.29	26.9
EER96530	Sorghum	nucleus	28.57	26.42
EES14897	Sorghum	nucleus, plastid	25.85	21.59

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8071272	UniProt:C5YZG1	ncoils:Coil	EnsemblPlants:EES17653
ProteinID:EES17653	ProteinID:EES17653.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF361	SMART:SM00338	EnsemblPlantsGene:SORBI_3009G030100	SUPFAM:SSF57959	unigene:Sbi.14633
UniParc:UPI0001A88E04	RefSeq:XP_002439223.1	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:2684889..2686350

Molecular Weight (calculated)

16039.9 Da

IEP (calculated)

10.169

GRAVY (calculated)

-0.656

Length

147 amino acids

Sequence
(BLAST)

001: MSSSRRSSSP DSNNNTDVSG GGGGGFAADE RKRKRMLSNR ESARRSRAKK QQRLEELVAE VARLQAENAA AQSRIAAFER EFAKVDGDNA VLRARHGELS
101: SRLESLGGVL EVLQMAGAAV DIPEMVTEDP MLRPWQPSFP PMQPIGF

Best Arabidopsis Sequence Match ( AT3G62420.1 )
(BLAST)

001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC

Arabidopsis Description

BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.