CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044546_P001	Maize	nucleus, plastid	75.82	81.69
TraesCS3B01G226200.1	Wheat	nucleus, plastid	58.82	60.4
TraesCS3A01G200600.1	Wheat	nucleus, plastid	60.78	60.39
TraesCS3D01G203300.1	Wheat	nucleus, plastid	60.13	59.74
HORVU3Hr1G047180.1	Barley	nucleus, plastid	57.52	56.77
Os01t0542700-01	Rice	nucleus, plastid	58.82	49.45
EES17653	Sorghum	nucleus	33.99	35.37
EER96530	Sorghum	nucleus	35.29	33.96
GSMUA_Achr5P27130_001	Banana	nucleus	32.03	33.79
EES16161	Sorghum	nucleus	32.68	31.85
EES06238	Sorghum	plastid	34.64	30.99
EES14897	Sorghum	nucleus, plastid	33.99	29.55
GSMUA_Achr3P24300_001	Banana	nucleus	24.84	27.94
GSMUA_Achr11P...	Banana	mitochondrion	28.1	23.63

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:C5XMW6	ncoils:Coil	EnsemblPlants:EES00878	ProteinID:EES00878
ProteinID:EES00878.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF120	SMART:SM00338	EnsemblPlantsGene:SORBI_3003G183000	SUPFAM:SSF57959
UniParc:UPI0001A84797	RefSeq:XP_002455758.1	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:48473342..48476596

Molecular Weight (calculated)

16744.0 Da

IEP (calculated)

9.632

GRAVY (calculated)

-0.573

Length

153 amino acids

Sequence
(BLAST)

001: MMASPGMVSM STVTTSPTTP STGSEGRQPE PDPLQAAATA ERKRKRKESN RLSAQRSRAR KQRQLDDLTA QVAALRARNG AMDAAARDAA RRCAAVQAEN
101: ALLHARTMEL SARLQSLTDL IECMEAGASS MYQQPLQQQL LPLVDTTLYN YYC

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.