Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G578200.1 | Wheat | cytosol | 85.6 | 94.27 |
| TraesCS3D01G517100.1 | Wheat | cytosol, mitochondrion, nucleus | 64.8 | 92.57 |
| TraesCS3A01G510100.1 | Wheat | cytosol | 80.8 | 92.24 |
| HORVU3Hr1G112020.2 | Barley | cytosol | 65.2 | 73.42 |
| Os01t0963600-01 | Rice | extracellular | 40.4 | 55.49 |
| Zm00001d011813_P001 | Maize | extracellular | 37.6 | 51.93 |
| KXG34187 | Sorghum | cytosol, mitochondrion, nucleus | 36.0 | 48.39 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G112010.1 | EnsemblPlantsGene:HORVU3Hr1G112010 | GO:GO:0006950 | GO:GO:0008150 | InterPro:ABA_WDS | PANTHER:PTHR33801 |
| PANTHER:PTHR33801:SF8 | PFAM:PF02496 | SEG:seg | UniParc:UPI000B464E7B | UniProt:A0A287MQA6 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr3H:+:685222841..685224341
Molecular Weight (calculated)
26550.1 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.964
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: TSKQASTRTG VDHTLASLAS PPALTMSGYY NGGGRTMSYS NTDECFDGGR TMYSNTTEEC YDAGKHGHGH GHGHGHGHGG ANMYSNTTDV ECFESGRQGH
101: GGGGRTMYSN TVDEECFDSG RHGLGHGHGH GYGHNDGRAM SYSTTTEECF GGGEQGQGYY KKEVKQHKNR ERVGEVGAIA AGAFALYEGY EAKKDPAHAR
201: KHQIEAGVAG AAALGAGGYA YHEHREQKQA AAGYGGQQEC RMPVHNSYCN
101: GGGGRTMYSN TVDEECFDSG RHGLGHGHGH GYGHNDGRAM SYSTTTEECF GGGEQGQGYY KKEVKQHKNR ERVGEVGAIA AGAFALYEGY EAKKDPAHAR
201: KHQIEAGVAG AAALGAGGYA YHEHREQKQA AAGYGGQQEC RMPVHNSYCN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.