CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plasma membrane 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23586	Soybean	cytosol	94.82	94.82
VIT_09s0002g07060.t01	Wine grape	cytosol	78.75	77.07
GSMUA_Achr4P20290_001	Banana	cytosol	67.3	76.95
KRH44474	Soybean	mitochondrion	75.75	76.58
PGSC0003DMT400001716	Potato	cytosol	76.29	76.29
Solyc03g116760.2.1	Tomato	cytosol, endoplasmic reticulum	75.75	75.75
KRH47436	Soybean	cytosol, mitochondrion, plastid	71.39	72.38
GSMUA_Achr6P35110_001	Banana	cytosol	71.39	71.78
GSMUA_Achr9P22520_001	Banana	mitochondrion	66.48	70.32
GSMUA_Achr8P18500_001	Banana	mitochondrion	65.94	68.36
Os02t0186500-01	Rice	cytosol, plasma membrane	68.12	66.31
EES06400	Sorghum	nucleus	67.57	66.31
TraesCS6D01G164200.2	Wheat	nucleus	67.57	66.31
TraesCS6A01G180900.1	Wheat	nucleus	67.57	66.13
Zm00001d015581_P001	Maize	cytosol	65.94	64.19
Zm00001d053725_P002	Maize	nucleus	65.67	63.93
TraesCS6B01G204600.3	Wheat	cytosol	67.57	62.16
KRH04634	Soybean	mitochondrion	18.53	61.26
KRH09180	Soybean	cytosol	52.86	59.88
KRG91411	Soybean	cytosol	55.04	59.59
KRH47437	Soybean	mitochondrion	55.86	58.57
Zm00001d036300_P001	Maize	mitochondrion, nucleus, plastid	52.86	55.91
KRH38660	Soybean	cytosol	53.41	55.84
KRH35406	Soybean	cytosol	55.31	55.62
TraesCS7B01G029200.1	Wheat	mitochondrion	54.77	54.77
KRH18977	Soybean	cytosol	56.68	54.74
TraesCS7A01G129300.1	Wheat	mitochondrion	54.5	54.64
TraesCS7D01G128300.1	Wheat	mitochondrion	54.5	54.64
HORVU6Hr1G035880.2	Barley	plastid	67.57	53.68
EER87920	Sorghum	mitochondrion	53.41	53.41
Os06t0166900-01	Rice	plasma membrane	53.13	53.13
Zm00001d045202_P002	Maize	mitochondrion	53.13	52.0
KRH02919	Soybean	cytosol, plastid	56.13	49.4
HORVU7Hr1G027010.1	Barley	plastid	55.04	44.2
KRH37541	Soybean	plasma membrane	31.06	20.92
KRH12592	Soybean	plasma membrane	29.97	20.11

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100819540	MapMan:18.4.1.44	Gene3D:3.30.200.20	EMBL:ACUP02009107	ncoils:Coil
EnsemblPlantsGene:GLYMA_15G007200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	UniProt:I1MCE9	InterPro:IPR000719
EnsemblPlants:KRH09718	ProteinID:KRH09718	ProteinID:KRH09718.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF88	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233BB67	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:597008..599998

Molecular Weight (calculated)

40840.6 Da

IEP (calculated)

6.022

GRAVY (calculated)

-0.373

Length

367 amino acids

Sequence
(BLAST)

001: MAFCPIFCCG NSSDRKGRGK KQPPWRVFSL KELHSATNNF NYDNKLGEGG FGSVYWGQLW DGSQIAVKRL KVWSNKADME FAVEVEILAR VRHKNLLSLR
101: GYCAEGQERL IVYDYMPNLS LLSHLHGQHS AESLLDWNRR MNIAIGSAEG IGYLHNQSMP HIIHRDIKAS NVLLDSDFQA QVADFGFAKL IPDGATHVTT
201: RVKGTLGYLA PEYAMLGKAN ESCDVYSFGI LLLELASGKK PLEKLSSAVK RSINDWALPL ACEKKFSELA DPKLEGNYAE EELKRVVLTA LLCVQSQPEK
301: RPTILEVVEL LKGESKDKLA QLENNELFKN PPAVGHTDDG TVAAEGSSDF ISEDKESKPE LEENTEP

Best Arabidopsis Sequence Match ( AT1G52540.1 )
(BLAST)

001: MQIFSCFCCG KGFDRQKKVK TEPSWRIFSL KELHAATNSF NYDNKLGEGR FGSVYWGQLW DGSQIAVKRL KAWSSREEID FAVEVEILAR IRHKNLLSVR
101: GYCAEGQERL IVYDYMPNLS LVSHLHGQHS SESLLDWTRR MNIAVSSAQA IAYLHHFATP RIVHGDVRAS NVLLDSEFEA RVTDFGYDKL MPDDGANKST
201: KGNNIGYLSP ECIESGKESD MGDVYSFGVL LLELVTGKRP TERVNLTTKR GITEWVLPLV YERKFGEIVD QRLNGKYVEE ELKRIVLVGL MCAQRESEKR
301: PTMSEVVEML MIESKEKMAQ LEANPLFNGN NDGEVIDESS EIISEVRDHQ

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8LDB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.