CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27341	Soybean	cytosol, nucleus, peroxisome	97.16	97.16
VIT_19s0014g01410.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	78.01	77.19
PGSC0003DMT400032246	Potato	cytosol, nucleus, plasma membrane	74.11	73.46
Solyc07g062540.2.1	Tomato	cytosol, nucleus, plasma membrane	73.76	73.11
CDX96801	Canola	cytosol, mitochondrion, nucleus, plastid	73.94	73.03
Bra016625.1-P	Field mustard	mitochondrion	73.76	72.98
CDY35127	Canola	mitochondrion	73.58	72.94
AT1G16900.1	Thale cress	cytosol, mitochondrion, plasma membrane, plastid	73.58	72.81
CDX83935	Canola	mitochondrion	73.58	72.81
CDY40024	Canola	mitochondrion	73.23	72.58
Bra026017.1-P	Field mustard	mitochondrion	73.05	72.41
GSMUA_Achr6P14480_001	Banana	peroxisome	71.81	70.43
Os01t0209000-01	Rice	cytosol, mitochondrion, nucleus, plasma membrane	69.5	68.53
EES02272	Sorghum	mitochondrion, nucleus, peroxisome, plasma membrane	69.15	67.94
TraesCS3B01G167800.1	Wheat	golgi	68.97	65.93
TraesCS3D01G150400.1	Wheat	plasma membrane	68.79	65.76
TraesCS3A01G134100.2	Wheat	golgi	68.62	65.7
HORVU3Hr1G029160.1	Barley	mitochondrion	68.44	65.42
Zm00001d039403_P003	Maize	plasma membrane	69.5	65.22

Protein Annotations

EntrezGene:100805094	MapMan:18.1.1.4.8	EMBL:ACUP02008374	EnsemblPlantsGene:GLYMA_13G270500	GO:GO:0000030	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	GO:GO:0097502	InterPro:GPI_mannosylTrfase	UniProt:I1M311	EnsemblPlants:KRH21979	ProteinID:KRH21979
ProteinID:KRH21979.1	PFAM:PF03901	PANTHER:PTHR22760	PANTHER:PTHR22760:SF2	TMHMM:TMhelix	UniParc:UPI000233B6A4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:37253396..37258520

Molecular Weight (calculated)

64096.9 Da

IEP (calculated)

8.375

GRAVY (calculated)

0.255

Length

564 amino acids

Sequence
(BLAST)

001: MSLSTVRQRR SEPSDPSPSE PYTKLDKPEK AEEKDEGLGW VFPFVALGLL RYMSATSNII HDCDEVFNYW EPLHFLLYKS GFQTWEYSSQ FALRSYLYLL
101: FHEIVGRPAS WLFSEDKVRV FYAVRFFLGL LSVLTDTVLV VALSRKYGKR LATYALAMLC LTSGCFFAST SFLPSSFSMY AISLASGLFL LDKPAAAISV
201: AVIGVILGWP FSILAFLPVT LYSLSRKFKQ AFIAAAVTSI LLLALSIVMD FYYYGKWTSS VLNLLIYNVA GGGESHLYGT EGPLYYLRNG FNNFNFCFVL
301: ALLFLGILPI AKKKYAPDLL IVISPIYIWL GFMSLQPHKE ERFLYPVYPL ICVAASAVIE SFPDLFRSKY NPYDRSIIVT VAKVMRPVVL SLILYASHAR
401: TFSLINGYSA PLEVYKILEH HDAENNSVLC VGSEWHRFPS SFFIPDYVGQ VRWIDDGFRG LLPIPFNSTL GGTASAPPYF NNKNMASDKQ YLHDVDACTF
501: LVELQLERPY LTRGSDLSTW EPIAALPYLD RELSPALYRS FFIPYLWQEK NVFGMYKLLK RRTT

Best Arabidopsis Sequence Match ( AT1G16900.1 )
(BLAST)

001: MDLTTTRQRR PLISDSSSSS STKSYSKTDK PGRSNGGDAE DGGLRWFLPF IALCYLRYMS ATSNIIHDCD EVFNYWEPLH YILYKSGFQT WEYSSNFALR
101: SYLYILFHEL AGRPASWWFG DDKVRVFYAV RLFLGLVSAV SDTVLVVALS RKYGKRIATY AVAMLCLTSG CFFASTSFLP SSFSMYAISL SSGLLLFEKY
201: AMAVAVSVVG VILGWPFSIL AFLPVVIYSL VKRFKQAFIA GAVTTIFLLG VSLLVDYYYY KRWTSSVLNL LIYNVLGGGE SHLYGTEGAL FYIRNGFNNF
301: NFCFILAMLF VAIYPVIRRK YDRALLVVIS PMYIWLAFMS LQPHKEERFL YPIYPLICVS ASAVIENIPE LFREKYSSRE SLLVTITKYM RPVILGCILC
401: ASHSRTFALI NGYSAPLEVY KLLEHHDDAG PGSVLCVGSE WHRYPSSFFV PHYISEVRWI DDGFRGLLPF PFNNTLGGTS ASPPYFNNKN QASEEQYLKN
501: IETCTFLIEL QLSRPYQYRG SDLSTWEAIA VLPYLDRELS PAKYRSFFIP HMWQEKNVFG KYVALRRVPK

Arabidopsis Description

ALG9Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ49]
SUBAcon: [plastid,cytosol,plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.