CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 20458513

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36424	Soybean	cytosol	84.38	84.19
CDY04777	Canola	cytosol	65.19	67.75
VIT_18s0089g00030.t01	Wine grape	cytosol	67.03	66.81
CDY03692	Canola	cytosol	63.79	66.07
Bra024544.1-P	Field mustard	cytosol	64.66	65.93
Bra007977.1-P	Field mustard	cytosol	63.58	65.85
AT1G22870.1	Thale cress	cytosol	64.55	65.61
CDX96321	Canola	cytosol	61.96	65.56
CDY37942	Canola	cytosol	63.25	65.22
CDX72804	Canola	cytosol	61.85	65.15
AT1G71410.1	Thale cress	cytosol	63.25	64.58
CDY21396	Canola	cytosol	52.69	64.34
Bra016140.1-P	Field mustard	cytosol	56.36	64.33
Solyc11g042990.1.1	Tomato	plastid	64.01	63.6
GSMUA_Achr3P25170_001	Banana	cytosol	61.53	61.8
EES01072	Sorghum	cytosol	60.13	58.19
TraesCS3D01G231400.1	Wheat	cytosol	60.56	58.12
Zm00001d044478_P022	Maize	cytosol	60.13	58.0
TraesCS3A01G221700.2	Wheat	cytosol	60.24	57.81
TraesCS3B01G251500.3	Wheat	cytosol	60.24	57.81
Os01t0616100-01	Rice	cytosol, plasma membrane	43.86	55.37
HORVU3Hr1G054200.1	Barley	plastid	60.45	52.53
Zm00001d011351_P002	Maize	cytosol	57.22	51.55
HORVU3Hr1G048750.1	Barley	mitochondrion	13.25	35.96
KRG88859	Soybean	cytosol, peroxisome, plastid	5.6	20.97
KRG92577	Soybean	cytosol	16.27	19.04
KRH40335	Soybean	cytosol	15.95	18.66
KRH00899	Soybean	cytosol	15.84	18.61
KRH34211	Soybean	cytosol	6.14	18.27

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.10.10	EntrezGene:100796211	MapMan:18.4.17	EMBL:ACUP02007813	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_12G241900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	UniProt:I1LVI0	InterPro:IPR000719
InterPro:IPR011989	EnsemblPlants:KRH27546	ProteinID:KRH27546	ProteinID:KRH27546.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
PFscan:PS50011	PANTHER:PTHR12984	PANTHER:PTHR12984:SF6	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF48371
SUPFAM:SSF56112	UniParc:UPI000233CEB6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:40014518..40026190

Molecular Weight (calculated)

100693.0 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.174

Length

928 amino acids

Sequence
(BLAST)

001: MSLNMKTLTQ ALAKTAAVIE KTVQTTVQEV TGPKALQDYE LLDQIGSAGP GLAWRLYSGR ARDPSRQHQY PVVCVWVLDK RTLSEARMRA GLTKAAEDSF
101: LDLIRMDASK LVRLRHPGVV HVVQALDESK NAMAMVTEPL FASAANTLGI VDNILNLPKD LRGMEMGILE VKHGLLQIAE SLDFLHNHAH LIHRSISPEN
201: ILITLSGAWK LAGFGFAVSA TQTSGDSSNL QPFHYAEYDV EDSILPLQPS LNYTAPELVR STVSSAGCSS DIFSIGCLAY HLIARKPLFD CHNNVKMYMN
301: TLTYLSSDAF SSIPSELVPD LQRMLSPNES SRPTAMDFTG SPFFRHDTRL RALRFLDHML ERDNMQKSEF LKALSDMWKD FDSRVLRYKV LPPLCAELRN
401: VVIQPMILPM VLTIAESQDK NDFEQSTLPA LVPVLSSAAG ETLLLLVKHA ELIINKTSQE HLVSHVLPMI VRAYDDTDAR LQEEVLKKSV SLVKQLDAQL
501: VKQVVLPRVH GLALKTTVAT VRVNALLCLG DMVNQLDKHA VLDILQTIQR CTAVDRSPPT LMCTLGVANS IFKQYGVEFV AEHVLPLLIP LLTAQQLNVQ
601: QFAKYMLFVK DMLHKIEEKR GVAVTDSGTP EIKLSPVVNG LQSEATRTSS SSVPASTKNS SWDEDWGPKP KGTASSIQNS IDATSQSMAG NPVDQVTSLQ
701: KHLSLAALSA KQTAKSCPSV DVEWPPRASS GVTPQFGDTE RQTIAAGTSS TSNLESDDPF ADWPPHPNGS VSGGSGISNN GTLGMPLNKV GFNSMTSTSS
801: NMAPQTSNSW PVNSQSSAES ISLNSRSASS TTGSLNTGGL GQQKSLGFLK QSQAFPASNV SYNNVQSTAT DLGSIFSSNK NEQIAPKLAP PPSTTVGRGR
901: GRGRGAASTT RSSHTKSHAE QPPLLDLL

Best Arabidopsis Sequence Match ( AT1G22870.1 )
(BLAST)

001: MSINMRTLTQ ALAKTAAVIE KTVQTTVQEV TGPKPLQDYE LLDQIGSGGP GLAWKLYSAK ARDSTRPQQY PTVCVWVLDK RALSEARARA GLSKAAEDAF
101: LDLIRADSGK LVRLRHPGVV HVVQALDENK NAMAMVTEPL FASVANALGN VENVDNVPKD LKSMEMSLLE VKHGLLQIAE TLNFLHNNAH LIHRAVSPEN
201: VFITSAGSWK LAGFGFAISQ AQDGNLDNLQ SFHYSEYDVE DSILPLQPSL NYTAPELVRS KTSSAGVSSD IFSFGCLTYH LVARKPLFDC HNNVKMYMNT
301: LNYLTNETFS SIPSDLVSDL QRMLSMNESY RPTALDFTGS SFFRSDTRLR ALRFLDHMLE RDNMQKSEFL KALSDMWKDF DSRVLRYKVL PPLCAELRNL
401: VMQPVILPMV LTIAESQDKN DFELTTLPAL VPVLSTATGD TLLLLIKRAE LIINKTNAEH LVSHVLPLLL RAYNDNDVRI QEEVLKRSTS VAKQLDGQVV
501: RQAILPRVHG LALKTTVAAV RVNALLCLAE LVQTLDKLAV TEILQTIQRC TAVDRSAPTL MCTLAIANAI LKQYGVEFTS EHVLPLIIPL LTAQQLNVQQ
601: FAKYILFVKD ILRKIEEKRG VTVNDSGVPE VKPGCVADGL QFQTPTKKTE KVASAAKNSP AWDEDWALPT KISAPRDPGP ANSPQFNNST VQSQSSNRTS
701: VPTTCPAVDL EWPPRQSFNA TAQPANDETR INAAGTPTTP SFDELDPFAN WPPRPNSAST ASGGFHNSTT TQPPINNSGS GLRNNLTDGR QFQTTNNDFW
801: AFGNASLSSM KSQQETSGIR ASNADPLTSF GIQNQNQGMP SFGSSSYGNQ KPQADISSIF SSSRTEQSAM KLAPPPSIAV GRGRGRGRSG TSISKPNGSK
901: QQQTEQPSLL DLL

Arabidopsis Description

Kinase family with ARM repeat domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I313]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.