Factsheet for Solyc11g042990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g00030.t01	Wine grape	cytosol	64.88	65.09
CDY04777	Canola	cytosol	61.67	64.5
KRH27546	Soybean	extracellular	63.6	64.01
Bra024544.1-P	Field mustard	cytosol	62.21	63.85
KRH36424	Soybean	cytosol	63.17	63.44
CDY03692	Canola	cytosol	60.81	63.39
Bra007977.1-P	Field mustard	cytosol	60.6	63.17
CDY21396	Canola	cytosol	51.28	63.03
AT1G22870.1	Thale cress	cytosol	61.56	62.98
CDX72804	Canola	cytosol	59.31	62.88
CDX96321	Canola	cytosol	58.99	62.83
AT1G71410.1	Thale cress	cytosol	61.13	62.82
CDY37942	Canola	cytosol	60.39	62.67
GSMUA_Achr3P25170_001	Banana	cytosol	60.92	61.58
Bra016140.1-P	Field mustard	cytosol	53.0	60.89
EES01072	Sorghum	cytosol	58.99	57.46
Zm00001d044478_P022	Maize	cytosol	58.99	57.28
TraesCS3A01G221700.2	Wheat	cytosol	59.1	57.08
TraesCS3D01G231400.1	Wheat	cytosol	59.1	57.08
TraesCS3B01G251500.3	Wheat	cytosol	58.89	56.88
Os01t0616100-01	Rice	cytosol, plasma membrane	43.15	54.83
HORVU3Hr1G054200.1	Barley	plastid	59.1	51.69
Zm00001d011351_P002	Maize	cytosol	56.75	51.46
HORVU3Hr1G048750.1	Barley	mitochondrion	11.88	32.46
Solyc05g052200.2.1	Tomato	nucleus	15.52	17.73
Solyc06g048890.2.1	Tomato	cytosol	14.99	16.99

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.10.10	MapMan:18.4.17	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR011989	UniProt:K4D866	InterPro:Kinase-like_dom_sf	PFAM:PF00069
PFscan:PS50011	PANTHER:PTHR12984	PANTHER:PTHR12984:SF6	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF48371
SUPFAM:SSF56112	EnsemblPlantsGene:Solyc11g042990.1	EnsemblPlants:Solyc11g042990.1.1	UniParc:UPI000276A13E	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:33874082..33905201

Molecular Weight (calculated)

100877.0 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.144

Length

934 amino acids

Sequence
(BLAST)

001: MSINMKTLTQ AFAKASAKAS AVIEKTVQTT VQEVSGLPRA LQDYDLLDQI GSAGPGLAWK LYSAKARDGH AVYPNVCVWL LDKRALSEAR QRAGLSKTAE
101: DSFFDIIRAD ASRLVRLRHP GVVHVVQALD ESKNGMAMVT EPLFASAANA LGDLENIEKV PKELKGMEMG LLEVKHGLLQ IAETLDFLHS NARLVHRSIS
201: PETILITSNG AWKLGGFGFT ISVDQAADLS NIQAFHYSEY DVEDSIIPLQ PSLDYTAPEL VRSKTSSVGC SSDIFSFGCL AYHLIARKPL LDCHNNVKMY
301: MNNLNYLSSE AFSSIPQELV PDLHNMLSAN EALRPTALGF TSSSFFRDDT RLRALRFLDH MLERDNMQKS EFLKALSDMW KDFDSRVLRY KVLPPLCAEL
401: RNVVMQPMIL PMVLTIAESQ DKSDFGISTL PALVPVLNSA AGETLLLLVK HAELIINKAS QDHLISHVLP MLVRAYDDTD PRLQEEVLKK TVALAKQLDL
501: QLVKQAIMPR VHGLALKTTV AAVRVNALLC LGDMVHTLDK PAVLEILQTI QCCTAVDRSA PTLMCTLGVA NSILKKNGIE FVAEHVLPLL LPLLIAQQLN
601: VQQFAKYMAF VKEILRKIEE KRGVTLSDSG NPAVNIKSSL TVDAQIPGHV NKTSVSSQST TKRSPSWDED WIPPRGSSTT VQSSMALPSQ STSAGQSIQV
701: TSGPSQSYMT STVSGQQLSS SCPAVDVEWP PKPSSFGTTI LSDSEKQLEN KGALGSSLDD IDPFANWPPR SSGSSAASHS LNNGSTAPFA NRPVSNNSAT
801: LLNGLNSQTN GLDPWAFSTP ISSQPLKQNQ GITSRPDSIS SGGLDSQSSF GFMKHSQGSS SALGASSGRA TNIGSIFSSN KGEPTAPRLA PPPLTAVGRG
901: RGRGRGNQGQ LRSSTLGSGN AKSHPEQPPL LDLL

Best Arabidopsis Sequence Match ( AT1G71410.1 )
(BLAST)

001: MSINMKTFTQ ALARTAAVIE KTVHTTVQEV TGPKALQDYE LLDQIGSAGP GLAWKLYAAK ARDSTRPQQY PTVCVWMLDK RALSEARVRA NLSKAAEDAF
101: LDLIRADAGK LVRLRHPGVV HVVQALDENK NAMALVTEPL FASVANALGN VENVGNVPKD LKSMEMSLLE VKHGLLQISE TLNFLHNNAN LIHRAISPEN
201: VLITSAGSWK LAGFGFAISA AQAGNLDNMQ SFHYSEYDVE DSILPVQPSL NYTAPELMRS KSPSAGASSD IFSFGCLAYH LVARKPLFDC NNNVKMYMNT
301: LNYITNESFS SIPSELVSDL QRMLSTNESF RPTALDFTGS NFFRSDARLR ALRFLDHLLE RDNMQKSEFL KALSDMWKDF DSRVLRYKVL PPLCAELRNL
401: VLQPIILPMV LTIAQSQDRT DFELITLPAL VPVLSTASGD TLLLLVKHAD LITNKTDSEH LVSHVLPLLL RAYNDNDVRI QEEVLKRSTS VAKQLDGQVV
501: RQAILPRVHG LALKTTVAAV RVNALLCLAE LVQTLDKPAA IEILETIQRC TAVDRSAPTL MCTLAVANAI LKQYGVEFTA EHVLTLMMPL LTAQQLNVQQ
601: FAKYMLFVKD ILRKIEEKRG VTVNDSGVPE VKPHSAANGL QFQSSTQIPE KVASAAKSSP AWDEDWGSPS KDSAVGNPAS SRHNTNDQFN KSTDQSQPSI
701: MSTLPNKTTA PTTCPAVDIE WPPRQSSSLT APATDNQTQL NTGTSFASGF DELDPFANWP PRPNNGASVA STGLKNGAAS NFSNNLPGGT HFQTANNDNW
801: AFSSASLSSL KPPQQGNQGI SANNQDPLNS FGVPKQSQGM PSFTSGSYNN QKPADISSIF GSSKTEPSAM KLAPPPSIAM GRGRGRGRGG TGTSTSKPSG
901: SQPSLLDLL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C9H8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.