Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G017900.1 | Wheat | extracellular | 39.92 | 48.84 |
| TraesCS4A01G295900.1 | Wheat | extracellular, plasma membrane, vacuole | 39.92 | 47.3 |
| EES12221 | Sorghum | extracellular | 34.22 | 41.28 |
| Zm00001d003600_P001 | Maize | extracellular | 33.46 | 40.55 |
| Zm00001d025467_P001 | Maize | cytosol, mitochondrion, plasma membrane | 23.95 | 38.41 |
| HORVU4Hr1G002780.1 | Barley | plastid | 36.5 | 30.0 |
Protein Annotations
| EnsemblPlants:Os03t0663900-00 | EnsemblPlantsGene:Os03g0663900 | Gene3D:1.10.110.10 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | PFAM:PF14368 |
| ProteinID:BAS85619.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF47699 | TMHMM:TMhelix | UniParc:UPI0003939893 |
| UniProt:A0A0P0W141 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical conserved gene. (Os03t0663900-00)
Coordinates
chr3:-:26073918..26076563
Molecular Weight (calculated)
27698.7 Da
IEP (calculated)
11.821
GRAVY (calculated)
-0.142
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSHLAVLL GLLAFAAGVP AAAAATAVEG AQAATAEASC EPSILATQVS LFCAPDMPTA QCCEPVVASV DLGGGVPCLC RVAAEPQLII SGLNATHLLT
101: LYAACGGLRP GGARLAAACE GTSRPTGLHR HCPAAPGCFS PQAAGTRGTS PTAGGREALP AASAARRLRP QQARRPTPER LSSPVCPVRP GRPRRRSPAT
201: TLRRLLVAPG APRRHHHHRC HHPHRRRPVL RTRRRRRPLP RAMIRSQYFS SCSFASLSGY PCI
101: LYAACGGLRP GGARLAAACE GTSRPTGLHR HCPAAPGCFS PQAAGTRGTS PTAGGREALP AASAARRLRP QQARRPTPER LSSPVCPVRP GRPRRRSPAT
201: TLRRLLVAPG APRRHHHHRC HHPHRRRPVL RTRRRRRPLP RAMIRSQYFS SCSFASLSGY PCI
001: MTSKVVAAAA SAFLSRTNEL GNLQKSCIRI LSFCESNSSR IGLHIHCPVI KFGLLENLDL CNNLLSLYLK TDGIWNARKL FDEMSHRTVF AWTVMISAFT
101: KSQEFASALS LFEEMMASGT HPNEFTFSSV VRSCAGLRDI SYGGRVHGSV IKTGFEGNSV VGSSLSDLYS KCGQFKEACE LFSSLQNADT ISWTMMISSL
201: VGARKWREAL QFYSEMVKAG VPPNEFTFVK LLGASSFLGL EFGKTIHSNI IVRGIPLNVV LKTSLVDFYS QFSKMEDAVR VLNSSGEQDV FLWTSVVSGF
301: VRNLRAKEAV GTFLEMRSLG LQPNNFTYSA ILSLCSAVRS LDFGKQIHSQ TIKVGFEDST DVGNALVDMY MKCSASEVEA SRVFGAMVSP NVVSWTTLIL
401: GLVDHGFVQD CFGLLMEMVK REVEPNVVTL SGVLRACSKL RHVRRVLEIH AYLLRRHVDG EMVVGNSLVD AYASSRKVDY AWNVIRSMKR RDNITYTSLV
501: TRFNELGKHE MALSVINYMY GDGIRMDQLS LPGFISASAN LGALETGKHL HCYSVKSGFS GAASVLNSLV DMYSKCGSLE DAKKVFEEIA TPDVVSWNGL
601: VSGLASNGFI SSALSAFEEM RMKETEPDSV TFLILLSACS NGRLTDLGLE YFQVMKKIYN IEPQVEHYVH LVGILGRAGR LEEATGVVET MHLKPNAMIF
701: KTLLRACRYR GNLSLGEDMA NKGLALAPSD PALYILLADL YDESGKPELA QKTRNLMTEK RLSKKLGKST VEVQGKVHSF VSEDVTRVDK TNGIYAEIES
801: IKEEIKRFGS PYRGNENASF HSAKQAVVYG FIYASPEAPV HVVKNKILCK DCHEFVSILT RLVDKKITVR DGNQVHIFKN GECSCKREET SFV
101: KSQEFASALS LFEEMMASGT HPNEFTFSSV VRSCAGLRDI SYGGRVHGSV IKTGFEGNSV VGSSLSDLYS KCGQFKEACE LFSSLQNADT ISWTMMISSL
201: VGARKWREAL QFYSEMVKAG VPPNEFTFVK LLGASSFLGL EFGKTIHSNI IVRGIPLNVV LKTSLVDFYS QFSKMEDAVR VLNSSGEQDV FLWTSVVSGF
301: VRNLRAKEAV GTFLEMRSLG LQPNNFTYSA ILSLCSAVRS LDFGKQIHSQ TIKVGFEDST DVGNALVDMY MKCSASEVEA SRVFGAMVSP NVVSWTTLIL
401: GLVDHGFVQD CFGLLMEMVK REVEPNVVTL SGVLRACSKL RHVRRVLEIH AYLLRRHVDG EMVVGNSLVD AYASSRKVDY AWNVIRSMKR RDNITYTSLV
501: TRFNELGKHE MALSVINYMY GDGIRMDQLS LPGFISASAN LGALETGKHL HCYSVKSGFS GAASVLNSLV DMYSKCGSLE DAKKVFEEIA TPDVVSWNGL
601: VSGLASNGFI SSALSAFEEM RMKETEPDSV TFLILLSACS NGRLTDLGLE YFQVMKKIYN IEPQVEHYVH LVGILGRAGR LEEATGVVET MHLKPNAMIF
701: KTLLRACRYR GNLSLGEDMA NKGLALAPSD PALYILLADL YDESGKPELA QKTRNLMTEK RLSKKLGKST VEVQGKVHSF VSEDVTRVDK TNGIYAEIES
801: IKEEIKRFGS PYRGNENASF HSAKQAVVYG FIYASPEAPV HVVKNKILCK DCHEFVSILT RLVDKKITVR DGNQVHIFKN GECSCKREET SFV
Arabidopsis Description
PCMP-H31Pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.