Factsheet for PGSC0003DMT400039929

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10800.t01	Wine grape	cytosol	58.88	57.98
KRH05704	Soybean	cytosol	54.52	51.93
PGSC0003DMT400066384	Potato	cytosol	30.84	48.29
PGSC0003DMT400020612	Potato	cytosol	47.04	47.63
PGSC0003DMT400066385	Potato	cytosol	44.86	46.91
PGSC0003DMT400066386	Potato	cytosol	43.3	44.55
PGSC0003DMT400091080	Potato	cytosol	43.3	44.55
PGSC0003DMT400066389	Potato	cytosol	39.88	43.84
PGSC0003DMT400066392	Potato	cytosol	42.37	43.45
PGSC0003DMT400081445	Potato	cytosol	42.99	43.26
PGSC0003DMT400066383	Potato	cytosol	40.19	42.43
PGSC0003DMT400088862	Potato	cytosol	43.3	40.41
PGSC0003DMT400018674	Potato	cytosol	40.19	40.06
PGSC0003DMT400077411	Potato	cytosol	40.5	39.63
PGSC0003DMT400081450	Potato	cytoskeleton, cytosol, nucleus	38.63	37.8
PGSC0003DMT400081451	Potato	cytosol	38.32	37.61
PGSC0003DMT400018589	Potato	cytosol	29.59	37.55
PGSC0003DMT400081446	Potato	cytosol	37.69	36.89
PGSC0003DMT400081449	Potato	cytosol	22.12	36.6
PGSC0003DMT400094975	Potato	cytosol, extracellular, plastid	29.59	34.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400039929	EnsemblPlantsGene:PGSC0003DMG400015446	EntrezGene:102602233	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
InterPro:Lipase_GDXG_put_SER_AS	PANTHER:PTHR23024	PANTHER:PTHR23024:SF235	PFAM:PF07859	PGSC:PGSC0003DMG400015446	RefSeq:XP_006342613.1
ScanProsite:PS01174	SUPFAM:SSF53474	UniParc:UPI00029500E7	UniProt:M1B8Z9	MapMan:35.1	:

Description

Gibberellin receptor GID1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015446]

Coordinates

chr12:-:56691502..56692616

Molecular Weight (calculated)

35929.8 Da

IEP (calculated)

5.933

GRAVY (calculated)

-0.169

Length

321 amino acids

Sequence
(BLAST)

001: MTSSNLELDY EFLPYLKVYK NGHVERLLGI DAIPPGIDSH IGVSSKDISN IVPNSEVYVR MYLPINCNNQ KLPLVIYFHG GGFCMFTPSS SLYHNYLNTL
101: VSESRVIAIS VHYRRPPEHP VHVAYEDSWQ VLQWVFAHCN GDGPEPWLNE HANFARVFLS GDSAGANIAH NMAMNAGSVD PELMVDILGV ALIHPYFWGS
201: DPIGSEGLYP DKKAGVDRMW SFVCPSNPNN DDPRVNPIAK GAPGLMSLGC RRVLICVAEK DILKDRGRAY YEALGRSGWM GMVEIHETQG EDHVFHLHDL
301: DSQESKDLMK NLAHFFNVLA F

Best Arabidopsis Sequence Match ( AT1G47480.1 )
(BLAST)

001: MESTKKQVSL ELLPWLVVHT DGTVERLAGT EVCPPGLDPI TGVFSKDIII EPKTGLSARI YRPFSIQPGQ KIPLMLYFHG GAFLISSTSF PSYHTSLNKI
101: VNQANVIAVS VNYRLAPEHP LPTAYEDSWT ALKNIQAINE PWINDYADLD SLFLVGDSAG ANISHHLAFR AKQSDQTLKI KGIGMIHPYF WGTQPIGAEI
201: KDEARKQMVD GWWEFVCPSE KGSDDPWINP FADGSPDLGG LGCERVMITV AEKDILNERG KMYYERLVKS EWKGKVEIME TKEKDHVFHI FEPDCDEAME
301: MVRCLALFIN QVEA

Arabidopsis Description

CXE2Probable carboxylesterase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.