Factsheet for PGSC0003DMT400020612

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079190.2.1	Tomato	cytosol, extracellular	94.01	94.6
KRH61262	Soybean	cytosol	58.36	58.73
KRH51960	Soybean	cytosol	60.25	58.59
AT1G47480.1	Thale cress	cytosol	55.84	56.37
CDY69438	Canola	cytosol	55.2	55.73
Bra014080.1-P	Field mustard	cytosol	54.89	55.41
CDY17014	Canola	cytosol	54.57	55.1
VIT_18s0001g10810.t01	Wine grape	endoplasmic reticulum, golgi, mitochondrion, plastid	62.15	53.97
GSMUA_Achr5P11010_001	Banana	cytosol	48.27	51.17
PGSC0003DMT400066384	Potato	cytosol	32.18	49.76
PGSC0003DMT400066392	Potato	cytosol	47.95	48.56
PGSC0003DMT400066386	Potato	cytosol	47.0	47.76
PGSC0003DMT400091080	Potato	cytosol	46.69	47.44
PGSC0003DMT400039929	Potato	cytosol	47.63	47.04
PGSC0003DMT400066389	Potato	cytosol	41.32	44.86
PGSC0003DMT400066385	Potato	cytosol	42.27	43.65
PGSC0003DMT400088862	Potato	cytosol	47.0	43.31
PGSC0003DMT400066383	Potato	cytosol	41.32	43.09
PGSC0003DMT400081445	Potato	cytosol	41.96	41.69
PGSC0003DMT400077411	Potato	cytosol	40.06	38.72
PGSC0003DMT400018674	Potato	cytosol	38.8	38.2
PGSC0003DMT400081450	Potato	cytoskeleton, cytosol, nucleus	39.43	38.11
PGSC0003DMT400081451	Potato	cytosol	38.49	37.31
PGSC0003DMT400081449	Potato	cytosol	22.71	37.11
PGSC0003DMT400081446	Potato	cytosol	38.17	36.89
PGSC0003DMT400018589	Potato	cytosol	29.02	36.36
PGSC0003DMT400094975	Potato	cytosol, extracellular, plastid	29.65	34.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400020612	EnsemblPlantsGene:PGSC0003DMG400007987	EntrezGene:102604874	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF258	PFAM:PF07859	PGSC:PGSC0003DMG400007987	RefSeq:XP_006354905.1	SUPFAM:SSF53474
UniParc:UPI0002959162	UniProt:M1ADT6	MapMan:35.1	:	:	:

Description

Gibberellin receptor GID1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007987]

Coordinates

chr4:+:68486095..68487725

Molecular Weight (calculated)

35824.7 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.159

Length

317 amino acids

Sequence
(BLAST)

001: MDTSNNLEIV HDVFPYVQVY KNGTIKRLVG TEFTPATYDS QTNVTSKDVL IDPKSGISAR IYRPNSSTKS KKLPLVVYFH GGAFCISSIG DPKYHDSLNV
101: FVSCANVVLV SVDYRLAPEH PLPTAYDDSW FVLQWVAQHK SKQGTEVWLN EFVDFDTVFL AGDSAGANIS HFMAIRADEG LGMKLTGMLM ISPYFWGEEP
201: IGIEIKDSVR KSMVDKWWEF VCPSNKGNSD PLINPFVDEA PNLEELACDR VLVCVAELDI LRDRGILYYE SLMKSQWKGK VEIFETKGED HVFHIFNPNS
301: EKALDLVKCW ATFINEK

Best Arabidopsis Sequence Match ( AT1G47480.1 )
(BLAST)

001: MESTKKQVSL ELLPWLVVHT DGTVERLAGT EVCPPGLDPI TGVFSKDIII EPKTGLSARI YRPFSIQPGQ KIPLMLYFHG GAFLISSTSF PSYHTSLNKI
101: VNQANVIAVS VNYRLAPEHP LPTAYEDSWT ALKNIQAINE PWINDYADLD SLFLVGDSAG ANISHHLAFR AKQSDQTLKI KGIGMIHPYF WGTQPIGAEI
201: KDEARKQMVD GWWEFVCPSE KGSDDPWINP FADGSPDLGG LGCERVMITV AEKDILNERG KMYYERLVKS EWKGKVEIME TKEKDHVFHI FEPDCDEAME
301: MVRCLALFIN QVEA

Arabidopsis Description

CXE2Probable carboxylesterase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.