Factsheet for PGSC0003DMT400045009

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044938	Potato	plasma membrane	93.48	80.77
VIT_01s0010g02440.t01	Wine grape	mitochondrion	48.25	75.03
Os01t0902100-00	Rice	plasma membrane	52.07	63.53
KRH42626	Soybean	plasma membrane	68.2	58.97
KRH58734	Soybean	plasma membrane	67.41	58.4
OQU86956	Sorghum	plasma membrane	63.91	55.6
TraesCS3B01G425500.1	Wheat	cytosol, peroxisome, plasma membrane	64.31	55.3
TraesCS3D01G387200.1	Wheat	plasma membrane	63.99	55.29
TraesCS3A01G393500.1	Wheat	cytosol, peroxisome, plasma membrane	64.39	54.88
HORVU3Hr1G088900.8	Barley	plasma membrane, vacuole	64.07	53.88
PGSC0003DMT400011214	Potato	cytosol	7.07	53.61
GSMUA_Achr11P...	Banana	golgi	57.31	53.45
GSMUA_Achr5P25430_001	Banana	plasma membrane	56.36	53.19
PGSC0003DMT400080270	Potato	mitochondrion	44.2	48.47
PGSC0003DMT400057099	Potato	endoplasmic reticulum, plasma membrane	49.52	47.2
PGSC0003DMT400022108	Potato	plastid	49.21	40.43
PGSC0003DMT400056413	Potato	mitochondrion	42.69	38.44
PGSC0003DMT400018927	Potato	plasma membrane	35.77	35.63
PGSC0003DMT400016069	Potato	endoplasmic reticulum, plasma membrane	37.68	34.55
PGSC0003DMT400023487	Potato	plasma membrane	39.59	33.97
PGSC0003DMT400083884	Potato	plasma membrane	38.16	32.92
PGSC0003DMT400029581	Potato	plasma membrane	39.03	32.13
PGSC0003DMT400074333	Potato	mitochondrion	38.24	31.15

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M1BGY9	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	EnsemblPlantsGene:PGSC0003DMG400017456	PGSC:PGSC0003DMG400017456	EnsemblPlants:PGSC0003DMT400045009	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24223	PANTHER:PTHR24223:SF222	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0002959D1B	SEG:seg	:	:	:

Description

Multidrug resistance protein ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400017456]

Coordinates

chr5:-:11825845..11830825

Molecular Weight (calculated)

141102.0 Da

IEP (calculated)

8.019

GRAVY (calculated)

0.042

Length

1258 amino acids

Sequence
(BLAST)

0001: MPVPANKYSE TEQPFLQKDE VNTHDDAFSS ASIWSLITFR WLNPLFKKGH EEKLRVEHIP SIPHTKTSNE ADSLLEDALR EKNTSTFFIP HAILHMIWRP
0101: LACNAVFAGV NTIASYIGPL LIASFVNFLS GKKDESNWQE GMILAFIFFF AKTIVSLSQR QWYFGANRIG VRVRAALMAL IYKRTLSIKY GGTKDGKIIN
0201: FINVDVERIG DFCWHIHGAW LLPVQVTFAL LILYRNLGAA PSVAALFSTI FVMVSNTPLA KMQEKLHSKI MEAKDVRIEA TSETLKSMRV LKLHSWESTF
0301: LKKLLQLREN ERGWLKRYLY ACSAVAFLFW ASPTLVSVVT FGVCIILKTP LTSGAVLSAL ATFRVLQEPI YNLPELISMV AQTKVSVDRI QDFMREEDQM
0401: KLTSYHTPDT SEVAIELEPG EYAWDTNESK KSTIKITEKI RIMKGWKVAI CGSVGSGKSS LICSIMGEIP RISGSSINLN GSKAFVPQSA WIQTGTVRDN
0501: VLFGKEIHKA HYDDVVDQCA LKRDIEMWAD GDLNLVGERG MNLSGGQKQR IQLARAIYSD SDIYLLDDPF SAVDAQTGAH MFKAIVYATH QLEFLDASDL
0601: ILVMKDGRLV QSGKYNELIA DPDGELLRHM VAHNKSLDQV KPSQKGSCLT KGKNQKNQIE DLTNENKILE RTQQEDAVSG RVKWKVYSTF VTSAYKGALV
0701: LPVLLCQVLF QGLQMASNYW IAWGTEEEGR VTSKRLIGIF VLLSGGSSFF ILGRAVMLST IAIETSQKLY IGMMKSLFRA PLSFFDSTPS SRILNRSSTD
0801: QSTVDTDIPY RLAGLAFALI QLSSIVVLMS NVAWQIMFLF LLILAISVWY QAYYITTARE LARMVGIQKA PILHHFSESL TGVATIRCFN QEDRFLNKNL
0901: SLIDNYSRVV FHNSATMEWL CVRINFLFNL IFFFLLVILA HLPREAIDPS LAGLAATYGL NLNVLQAWVI WNLCNVENKM ISVERILQFS DVPSEAPLII
1001: EKSRPKPNWP LKGRIEIKDL HVQYSPDLPR VLKGITCTFP EGKKIGVVGR TGSGKSTLIQ ALFRVVESSE GCILIDGIDI SKIGLQDLRS KLSIIPQDPT
1101: LFQGTIRTNL DPLQQHTDQD IWEVLHKCHL ADIVKQDTRL LDAPVAEEGE NLSMGQRQIV CLARVLLQKR RILVLDEATA SVDTETDNVI QKTIREETNG
1201: CTVITVAHRI PTVIDNDLVL VLGEGKILEF DTPNQLLKNS SSAFSNLVAE FLGRSSKE

Best Arabidopsis Sequence Match ( AT3G13080.1 )
(BLAST)

0001: MDFLGSTTGS GTLAMLFSFS ESILPLDSRS FLLKPLFLRW LSGFLHSVLL LVLFFSWVRK KIRGDSGVTE SLKDRRDFGF KSALFCSLAL SLLNLVLMSL
0101: SGFYWYESGW LDNEQLVSSL GFLLGMVSWG VLSICLHRCR DCEHKKAPFL LRLWLVFYLV VSCYSLVVDF VMYERRETVP VHLLVFDIVA FIAAVFLGYV
0201: AVLKKDRSNS NGVLEEPLLN GGDSRVGGDD SVELNKTNGS GEATPYSRAG ILSLLTFSWM SPLIDIGNKK TLDLEDVPQL HDTDSVVGLA PKFRSMLESP
0301: DGGERSGVTT FKLIKALYFT AQWEILVTAF FAFIYTVASY VGPALIDTFV QYLNGRRQYN HEGYVLVITF FAAKIVECLS QRHWFFRLQK VGIRMRSALV
0401: AMIYEKGLTL SCQSKQGRTS GEIINFMTVD AERIGNFSWY MHDPWMVLLQ VGLALWILYR NLGLASIAAL VATIIVMLIN FPFGRMQERF QEKLMEAKDS
0501: RMKSTSEILR NMRILKLQGW EMKFLSKIFD LRKSEEGWLK KYVYNSAVIS FVFWGAPTLV SVSTFGACIL LGIPLESGKI LSALATFRIL QEPIYNLPDT
0601: ISMIVQTKVS LDRLASYLCL DNLQPDIVER LPKGSSDVAV EVINSTLSWD VSSSNPTLKD INFKVFPGMK VAVCGTVGSG KSSLLSSLLG EVPKVSGSLK
0701: VCGTKAYVAQ SPWIQSGKIE DNILFGKPME RERYDKVLEA CSLSKDLEIL SFGDQTVIGE RGINLSGGQK QRIQIARALY QDADIYLFDD PFSAVDAHTG
0801: SHLFKEVLLG LLCSKSVIYV THQVEFLPAA DLILVMKDGR ISQAGKYNDI LNSGTDFMEL IGAHQEALAV VDSVDANSVS EKSALGQENV IVKDAIAVDE
0901: KLESQDLKND KLESVEPQRQ IIQEEEREKG SVALDVYWKY ITLAYGGALV PFILLGQVLF QLLQIGSNYW MAWATPVSED VQAPVKLSTL MIVYVALAFG
1001: SSLCILLRAT LLVTAGYKTA TELFHKMHHC IFRSPMSFFD STPSGRIMSR ASTDQSAVDL ELPYQFGSVA ITVIQLIGII GVMSQVSWLV FLVFIPVVAA
1101: SIWYQRYYIA AARELSRLVG VCKAPLIQHF SETISGATTI RSFSQEFRFR SDNMRLSDGY SRPKFYTAGA MEWLCFRLDM LSSLTFVFSL VFLVSIPTGV
1201: IDPSLAGLAV TYGLSLNTLQ AWLIWTLCNL ENKIISVERI LQYASVPSEP PLVIESNRPE QSWPSRGEVE IRDLQVRYAP HMPLVLRGIT CTFKGGLRTG
1301: IVGRTGSGKS TLIQTLFRIV EPSAGEIRID GVNILTIGLH DLRLRLSIIP QDPTMFEGTM RSNLDPLEEY TDDQIWEALD KCQLGDEVRK KEQKLDSSVS
1401: ENGDNWSMGQ RQLVCLGRVL LKRSKILVLD EATASVDTAT DNLIQKTLRE HFSDCTVITI AHRISSVIDS DMVLLLSNGI IEEYDTPVRL LEDKSSSFSK
1501: LVAEYTSRSS SSFD

Arabidopsis Description

ABCC3MRP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VHA7]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.