Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008365 | Potato | cytosol, nucleus, plastid | 82.05 | 84.21 |
| PGSC0003DMT400008364 | Potato | cytosol, nucleus, plastid | 84.62 | 82.5 |
| Solyc06g053290.1.1 | Tomato | cytosol, nucleus, peroxisome | 54.7 | 55.65 |
| Solyc03g082510.1.1 | Tomato | cytosol | 53.85 | 55.26 |
| Solyc03g082530.1.1 | Tomato | cytosol, nucleus, plastid | 55.56 | 53.28 |
| KRH64344 | Soybean | cytosol, nucleus | 44.44 | 51.49 |
| Solyc06g053260.1.1 | Tomato | cytosol | 55.56 | 50.39 |
| VIT_16s0098g01150.t01 | Wine grape | cytosol | 51.28 | 49.59 |
| Solyc01g096340.2.1 | Tomato | cytosol | 42.73 | 45.87 |
| KRH53592 | Soybean | nucleus | 52.14 | 44.85 |
| Solyc05g056440.1.1 | Tomato | cytosol | 28.21 | 31.43 |
| Solyc05g056430.1.1 | Tomato | cytosol | 27.35 | 30.77 |
| Solyc10g018340.1.1 | Tomato | mitochondrion | 27.35 | 23.19 |
| Solyc08g079130.1.1 | Tomato | mitochondrion | 24.79 | 21.64 |
| Solyc08g079150.1.1 | Tomato | mitochondrion | 28.21 | 20.37 |
| Solyc08g079140.1.1 | Tomato | mitochondrion | 25.64 | 20.27 |
| Solyc01g091030.2.1 | Tomato | mitochondrion | 27.35 | 20.13 |
Protein Annotations
| EnsemblPlants:Solyc03g082520.1.1 | EnsemblPlantsGene:Solyc03g082520.1 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | InterPro:SAUR_fam |
| PANTHER:PTHR31374 | PANTHER:PTHR31374:SF15 | PFAM:PF02519 | SEG:seg | UniParc:UPI000276856C | UniProt:K4BI28 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:52456478..52456831
Molecular Weight (calculated)
14019.6 Da
IEP (calculated)
6.863
GRAVY (calculated)
-0.658
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSENKHHHL NFHIQFHFPF HLHHHPKEAL RNTAPRGYVT VLVGQGEEQQ QKFVIPIMHI NHPLFTQLLN EAEQVYGFHH NGPLNIPCNI DEFRYIDDMI
101: DNDVHHHHHH HLWCFKA
101: DNDVHHHHHH HLWCFKA
001: MGNGDKVMSH WSFHIPRLHH HEHDHEKVPK GCLAVKVGQG EEQERFVIPV MYFNHPLFGQ LLKEAEEEFG FAQKGTITIP CHVEEFRYVQ GLIDRENTRF
101: LGTNLLDHHH HHHNHLIRCF RV
101: LGTNLLDHHH HHHNHLIRCF RV
Arabidopsis Description
AT4g00880 protein [Source:UniProtKB/TrEMBL;Acc:O23089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.