Factsheet for Solyc04g055210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0742g00040.t01	Wine grape	nucleus	10.55	43.75
Solyc06g007180.2.1	Tomato	cytosol, plastid	64.32	21.69
TraesCS5D01G159100.1	Wheat	cytosol	61.81	21.03
TraesCS5A01G153900.5	Wheat	cytosol	61.81	20.99
TraesCS5B01G152600.1	Wheat	cytosol	61.31	20.85
GSMUA_Achr9P04460_001	Banana	cytosol	59.3	20.74
TraesCS3D01G077300.1	Wheat	cytosol	59.8	20.48
TraesCS3A01G077100.1	Wheat	cytosol	59.8	20.48
GSMUA_Achr5P28200_001	Banana	cytosol	60.8	20.34
HORVU3Hr1G013910.4	Barley	cytosol	59.3	20.31
Zm00001d044608_P001	Maize	cytosol	59.8	19.64
EES09082	Sorghum	cytosol	57.79	19.36
Os03t0291500-01	Rice	plasma membrane	55.78	18.38
HORVU5Hr1G048100.9	Barley	mitochondrion, plastid	42.21	14.0
Zm00001d031563_P001	Maize	cytosol	3.02	3.33
Solyc04g055200.2.1	Tomato	cytosol	6.03	3.01
Zm00001d010355_P001	Maize	mitochondrion	3.02	2.68
Zm00001d028766_P001	Maize	endoplasmic reticulum	4.02	2.62

Protein Annotations

KEGG:00250+6.3.5.4	Gene3D:3.60.20.10	MapMan:35.1	InterPro:AsnB_N	InterPro:GATase_2_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004066	GO:GO:0005488	GO:GO:0005515	GO:GO:0006529	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009646	GO:GO:0009987	GO:GO:0042803
InterPro:IPR017932	InterPro:IPR029055	UniProt:K4BSR8	InterPro:Ntn_hydrolases_N	PFAM:PF13537	PFscan:PS51278
PANTHER:PTHR11772	PANTHER:PTHR11772:SF13	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc04g055210.2	EnsemblPlants:Solyc04g055210.2.1	UniParc:UPI0002765C54

Description

No Description!

Coordinates

chr4:-:53833599..53843035

Molecular Weight (calculated)

22381.6 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.206

Length

199 amino acids

Sequence
(BLAST)

001: MCGILAIFGC TDNSHAKRSR VIELSRRLRH RGPDWSGLHS HEDCYLAHQR LAIVDPTSGD QPLYNEDKTI VVAVNGEIYN HKELREKLKS HQFRTESDCE
101: VIAHLYEEYG ENFVDMLDGM FSFVLLDTRD KSFIAARDAI GITPLYMGWG LDVSSIFPKH WPNISTASIP ALTFVTHSLL SVASLDRTST SSRSPVLGM

Best Arabidopsis Sequence Match ( AT5G10240.1 )
(BLAST)

001: MCGILAVLGC VDNSQAKRSR IIELSRRLRH RGPDWSGLHC YEDCYLAHER LAIVDPTSGD QPLYNEDKTI AVTVNGEIYN HKALRENLKS HQFRTGSDCE
101: VIAHLYEEHG EEFVDMLDGM FAFVLLDTRD KSFIAARDAI GITPLYIGWG LDGSVWFASE MKALSDDCEQ FMCFPPGHIY SSKQGGLRRW YNPPWFSEVV
201: PSTPYDPLVV RNTFEKAVIK RLMTDVPFGV LLSGGLDSSL VASVALRHLE KSEAACQWGS KLHTFCIGLK GSPDLKAGRE VADYLGTRHH ELHFTVQDGI
301: DAIEEVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGSDEIFG GYLYFHKAPN KKEFHEETCR KIKALHQYDC LRANKSTSAW GVEARVPFLD
401: KEFINVAMSI DPEWKMIRPD LGRIEKWVLR NAFDDEKNPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAN KHVSETMLMN ASFVFPDNTP LTKEAYYYRT
501: IFEKFFPKSA ARATVPGGPS VACSTAKAVE WDAAWSQNLD PSGRAALGVH VSAYGEDKTE DSRPEKLQKL AEKTPAIV

Arabidopsis Description

ASN3Asparagine synthetase [glutamine-hydrolyzing] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.