Factsheet for Solyc06g007180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010685	Potato	cytosol	95.08	95.08
VIT_06s0004g06830.t01	Wine grape	cytosol	87.46	88.51
KRH30252	Soybean	cytosol	82.88	84.46
KRG98262	Soybean	cytosol	82.88	84.46
KRH17053	Soybean	cytosol, endoplasmic reticulum, mitochondrion	83.05	84.34
KRH30266	Soybean	endoplasmic reticulum	82.71	84.28
KRH72702	Soybean	cytosol, endoplasmic reticulum	82.54	83.68
AT3G47340.1	Thale cress	cytosol	82.54	83.39
Zm00001d031563_P001	Maize	cytosol	25.25	82.78
Bra018160.1-P	Field mustard	cytosol	81.69	82.25
CDY71298	Canola	cytosol	76.78	81.62
Zm00001d010355_P001	Maize	mitochondrion	30.85	81.25
TraesCS5A01G153900.5	Wheat	cytosol	80.68	81.23
CDX99060	Canola	cytosol	80.51	81.2
TraesCS5D01G159100.1	Wheat	cytosol	80.34	81.03
TraesCS5B01G152600.1	Wheat	cytosol	80.34	81.03
CDY21785	Canola	cytosol	80.85	80.71
Bra019500.1-P	Field mustard	cytosol	80.85	80.57
CDX77846	Canola	cytosol	80.34	80.07
GSMUA_Achr5P28200_001	Banana	cytosol	80.51	79.83
Solyc04g055200.2.1	Tomato	cytosol	53.9	79.7
TraesCS3A01G077100.1	Wheat	cytosol	78.14	79.35
GSMUA_Achr9P04460_001	Banana	cytosol	76.27	79.09
HORVU3Hr1G013910.4	Barley	cytosol	77.63	78.83
TraesCS3D01G077300.1	Wheat	cytosol	77.12	78.31
CDY51796	Canola	cytosol	29.49	77.33
Zm00001d044608_P001	Maize	cytosol	76.1	74.09
Zm00001d028766_P001	Maize	endoplasmic reticulum	37.46	72.46
EES09082	Sorghum	cytosol	72.71	72.22
HORVU5Hr1G048100.9	Barley	mitochondrion, plastid	72.54	71.33
Os03t0291500-01	Rice	plasma membrane	70.0	68.38
Solyc04g055210.2.1	Tomato	plastid	21.69	64.32

Protein Annotations

KEGG:00250+6.3.5.4	Gene3D:3.40.50.620	Gene3D:3.60.20.10	MapMan:4.1.2.1.1	InterPro:AsnB_N	InterPro:Asn_synth_AEB
InterPro:Asn_synthase	InterPro:GATase_2_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004066
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006529	GO:GO:0006541	GO:GO:0006950
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009605
GO:GO:0009628	GO:GO:0009646	GO:GO:0009744	GO:GO:0009749	GO:GO:0009750	GO:GO:0009987
GO:GO:0009991	GO:GO:0016874	GO:GO:0042803	GO:GO:0043617	InterPro:IPR014729	InterPro:IPR017932
InterPro:IPR029055	UniProt:K4C3A1	InterPro:Ntn_hydrolases_N	PFAM:PF00733	PFAM:PF13537	PIRSF:PIRSF001589
PFscan:PS51278	PANTHER:PTHR11772	PANTHER:PTHR11772:SF13	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	SUPFAM:SSF56235
EnsemblPlantsGene:Solyc06g007180.2	EnsemblPlants:Solyc06g007180.2.1	TIGRFAMs:TIGR01536	UniParc:UPI0002766100	SEG:seg	:

Description

Asparagine synthetase [glutamine-hydrolyzing] 1 [Source:Projected from Arabidopsis thaliana (AT3G47340) UniProtKB/Swiss-Prot;Acc:P49078]

Coordinates

chr6:-:1237837..1242525

Molecular Weight (calculated)

66256.8 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.261

Length

590 amino acids

Sequence
(BLAST)

001: MCGILALLGC SDDSQAKRVR VLELSRRLKH RGPDWSGIFQ YGDFYLAHQR LAIIDPASGD QPLFNEDKKI VVTVNGEIYN HEKLRKLMPN HKFRTGSDCD
101: VIAHLYEEYG ENFVDMLDGV FSFVLLDTRD NSFLAARDAI GITPLYIGWG LDGSVWISSE LKGLNDDCEH FEVFPPGHLY SSKNGGLRRW YNPAWFSEAI
201: PSTPYDTLVL RRAFENAVIK RLMTDVPFGV LLSGGLDSSL VASVTARYLA GTKAAKQWGA QLHSFCVGLE GSPDLKAAKE VADFLGTVHH EFHFTVQDGI
301: DAIEDVIYHI ETYDVTTIRA STPMFLMSRK IKSLGVKMVI SGEGADEIFG GYLYFHKAPN KEEFHRETCR KIKALHQYDC LRANKATSAW GLEARVPFLD
401: KEFINVAMSI DPEWKMIKHD QGRIEKWVLR KAFDDEEQPY LPKHILYRQK EQFSDGVGYS WIDGLKAHAE QHVTDRMMLN AAHIFPHNTP TTKEGYYYRM
501: IFDRFFPQNS ASLTVPGGPS IACSTAKAIE WDASWSNNLD PSGRAAIGVH NSAYDNHLSG VANGNLDTPI ISNMPRMVGV GVAAELTIRS

Best Arabidopsis Sequence Match ( AT3G47340.1 )
(BLAST)

001: MCGILAVLGC SDDSQAKRVR VLELSRRLRH RGPDWSGLYQ NGDNYLAHQR LAVIDPASGD QPLFNEDKTI VVTVNGEIYN HEELRKRLKN HKFRTGSDCE
101: VIAHLYEEYG VDFVDMLDGI FSFVLLDTRD NSFMVARDAI GVTSLYIGWG LDGSVWISSE MKGLNDDCEH FETFPPGHFY SSKLGGFKQW YNPPWFNESV
201: PSTPYEPLAI RRAFENAVIK RLMTDVPFGV LLSGGLDSSL VASITARHLA GTKAAKQWGP QLHSFCVGLE GSPDLKAGKE VAEYLGTVHH EFHFSVQDGI
301: DAIEDVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGADEIFG GYLYFHKAPN KKEFHQETCR KIKALHKYDC LRANKSTSAF GLEARVPFLD
401: KDFINTAMSL DPESKMIKPE EGRIEKWVLR RAFDDEERPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAA QNVNDKMMSN AGHIFPHNTP NTKEAYYYRM
501: IFERFFPQNS ARLTVPGGAT VACSTAKAVE WDASWSNNMD PSGRAAIGVH LSAYDGKNVA LTIPPLKAID NMPMMMGQGV VIQS

Arabidopsis Description

ASN1DIN6 [Source:UniProtKB/TrEMBL;Acc:A0A178VBT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.