CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72702	Soybean	cytosol, endoplasmic reticulum	96.73	96.56
KRH30252	Soybean	cytosol	87.78	88.08
KRH30266	Soybean	endoplasmic reticulum	87.61	87.91
KRG98262	Soybean	cytosol	87.44	87.74
VIT_06s0004g06830.t01	Wine grape	cytosol	86.57	86.28
Solyc06g007180.2.1	Tomato	cytosol, plastid	84.34	83.05
AT3G47340.1	Thale cress	cytosol	83.13	82.71
Bra018160.1-P	Field mustard	cytosol	82.96	82.25
PGSC0003DMT400010685	Potato	cytosol	83.3	82.03
CDY71298	Canola	cytosol	77.8	81.44
Zm00001d031563_P001	Maize	cytosol	25.13	81.11
CDX99060	Canola	cytosol	81.58	81.03
TraesCS5A01G153900.5	Wheat	cytosol	81.58	80.89
TraesCS5D01G159100.1	Wheat	cytosol	81.24	80.68
CDY21785	Canola	cytosol	81.76	80.37
TraesCS5B01G152600.1	Wheat	cytosol	80.89	80.34
Bra019500.1-P	Field mustard	cytosol	81.76	80.24
GSMUA_Achr5P28200_001	Banana	cytosol	81.76	79.83
CDX77846	Canola	cytosol	80.72	79.22
HORVU3Hr1G013910.4	Barley	cytosol	79.17	79.17
Zm00001d010355_P001	Maize	mitochondrion	30.46	79.02
TraesCS3A01G077100.1	Wheat	cytosol	79.0	79.0
GSMUA_Achr9P04460_001	Banana	cytosol	77.28	78.91
TraesCS3D01G077300.1	Wheat	cytosol	78.66	78.66
CDY51796	Canola	cytosol	30.29	78.22
KRH31291	Soybean	cytosol, nucleus	74.7	76.68
KRG97578	Soybean	cytosol	74.7	76.27
Zm00001d044608_P001	Maize	cytosol	77.62	74.42
EES09082	Sorghum	cytosol	73.84	72.22
Zm00001d028766_P001	Maize	endoplasmic reticulum	37.52	71.48
HORVU5Hr1G048100.9	Barley	mitochondrion, plastid	73.67	71.33
Os03t0291500-01	Rice	plasma membrane	69.02	66.39

Protein Annotations

KEGG:00250+6.3.5.4	Gene3D:3.40.50.620	Gene3D:3.60.20.10	MapMan:4.1.2.1.1	EMBL:ACUP02009041	InterPro:AsnB_N
InterPro:Asn_synth_AEB	InterPro:Asn_synthase	InterPro:GATase_2_dom	EnsemblPlantsGene:GLYMA_14G195000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004066	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006529
GO:GO:0006541	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009628
GO:GO:0009646	GO:GO:0009987	GO:GO:0016874	GO:GO:0042803	UniProt:I1MBC5	InterPro:IPR014729
InterPro:IPR017932	InterPro:IPR029055	EnsemblPlants:KRH17053	ProteinID:KRH17053	ProteinID:KRH17053.1	InterPro:Ntn_hydrolases_N
PFAM:PF00733	PFAM:PF13537	PIRSF:PIRSF001589	PFscan:PS51278	PANTHER:PTHR11772	PANTHER:PTHR11772:SF13
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	SUPFAM:SSF56235	TIGRFAMs:TIGR01536	UniParc:UPI0000F529F5	SEG:seg

Description

hypothetical protein

Coordinates

chr14:-:46001661..46008431

Molecular Weight (calculated)

65558.8 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.320

Length

581 amino acids

Sequence
(BLAST)

001: MCGILAVLGC SDDSRAKRVR VLELSRRLKH RGPDWSGLHQ HGDCFLAHQR LAIVDPASGD QPLFNEDKSV IVTVNGEIYN HEELRKQLPN HNFRTGSDCD
101: VIAHLYEEHG EDFVDMLDGI FSFVLLDTRD NSFIVARDAI GVTSLYIGWG LDGSVWISSE MKGLNDDCEH FECFPPGHLY SSKERGFRRW YNPPWFSEAI
201: PSAPYDPLVL RHAFEQAVIK RLMTDVPFGV LLSGGLDSSL VASITSRYLA NTKAAEQWGS KLHSFCVGLE GSPDLKAAKE VADYLGTVHH EFTFTVQDGI
301: DAIEDVIYHI ETYDVTTIRA STPMFLMSRK IKSLGVKWVI SGEGSDEIFG GYLYFHKAPN KEEFHRETCR KIKALHQYDC LRANKSTFAW GLEARVPFLD
401: KAFINAAMSI DPEWKMIKRD EGRIEKWILR RAFDDEEHPY LPKHILYRQK EQFSDGVGYS WIDGLKAHAA KHVTEKMMLN AGNIYPHNTP KTKEAYYYRM
501: IFERFFPQNS ARLTVPGGAS VACSTAKAVE WDAAWSNNLD PSGRAALGVH ISAYENQNNK GVEIEKIIPM DAAPLGVAIQ G

Best Arabidopsis Sequence Match ( AT3G47340.1 )
(BLAST)

001: MCGILAVLGC SDDSQAKRVR VLELSRRLRH RGPDWSGLYQ NGDNYLAHQR LAVIDPASGD QPLFNEDKTI VVTVNGEIYN HEELRKRLKN HKFRTGSDCE
101: VIAHLYEEYG VDFVDMLDGI FSFVLLDTRD NSFMVARDAI GVTSLYIGWG LDGSVWISSE MKGLNDDCEH FETFPPGHFY SSKLGGFKQW YNPPWFNESV
201: PSTPYEPLAI RRAFENAVIK RLMTDVPFGV LLSGGLDSSL VASITARHLA GTKAAKQWGP QLHSFCVGLE GSPDLKAGKE VAEYLGTVHH EFHFSVQDGI
301: DAIEDVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGADEIFG GYLYFHKAPN KKEFHQETCR KIKALHKYDC LRANKSTSAF GLEARVPFLD
401: KDFINTAMSL DPESKMIKPE EGRIEKWVLR RAFDDEERPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAA QNVNDKMMSN AGHIFPHNTP NTKEAYYYRM
501: IFERFFPQNS ARLTVPGGAT VACSTAKAVE WDASWSNNMD PSGRAAIGVH LSAYDGKNVA LTIPPLKAID NMPMMMGQGV VIQS

Arabidopsis Description

ASN1DIN6 [Source:UniProtKB/TrEMBL;Acc:A0A178VBT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.