CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97578	Soybean	cytosol	95.23	94.73
Solyc04g055200.2.1	Tomato	cytosol	60.07	85.21
Bra024345.1-P	Field mustard	cytosol	84.45	84.6
CDY08829	Canola	cytosol	84.45	84.6
AT5G10240.1	Thale cress	cytosol	86.22	84.43
CDY14529	Canola	cytosol	84.1	84.25
TraesCS1D01G430300.1	Wheat	cytosol, mitochondrion	77.74	83.18
AT5G65010.2	Thale cress	cytosol	84.1	82.21
Bra006053.1-P	Field mustard	mitochondrion, plastid	83.92	81.9
TraesCS1A01G382800.1	Wheat	cytosol, mitochondrion	84.81	81.77
CDX81165	Canola	plastid	83.75	81.72
CDX78372	Canola	plastid	83.75	81.72
TraesCS1B01G408200.1	Wheat	cytosol, plastid	84.1	81.09
Os06t0265000-01	Rice	cytosol	84.63	81.05
TraesCS1B01G453600.1	Wheat	cytosol, plastid	84.28	80.98
TraesCS1D01G390500.1	Wheat	cytosol, plastid	84.28	80.71
TraesCS1A01G422100.1	Wheat	cytosol, mitochondrion	83.92	80.65
EER89574	Sorghum	cytosol	83.92	80.37
Zm00001d045675_P003	Maize	extracellular	83.04	79.53
GSMUA_Achr9P15390_001	Banana	cytosol, mitochondrion	84.45	75.51
HORVU1Hr1G092110.4	Barley	cytosol, plastid	84.28	75.0
KRH17053	Soybean	cytosol, endoplasmic reticulum, mitochondrion	76.68	74.7
KRH72702	Soybean	cytosol, endoplasmic reticulum	76.68	74.57
KRG98262	Soybean	cytosol	76.15	74.44
KRH30252	Soybean	cytosol	76.15	74.44
KRH30266	Soybean	endoplasmic reticulum	75.97	74.27
HORVU1Hr1G084370.2	Barley	plastid	83.92	72.3
CDY23169	Canola	mitochondrion	8.48	51.06
CDY54341	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.54	50.71
CDY50475	Canola	cytosol	12.54	50.71
CDY01568	Canola	cytosol	12.54	50.71
CDY01480	Canola	cytosol	12.54	50.71
CDX87183	Canola	cytosol	12.37	50.0
CDY17904	Canola	cytosol	12.37	49.3
CDX86918	Canola	cytosol, mitochondrion	8.48	35.82

Protein Annotations

KEGG:00250+6.3.5.4	EntrezGene:100788806	Gene3D:3.40.50.620	Gene3D:3.60.20.10	MapMan:4.1.2.1.1	EMBL:ACUP02007137
InterPro:AsnB_N	InterPro:Asn_synth_AEB	InterPro:Asn_synthase	InterPro:GATase_2_dom	EnsemblPlantsGene:GLYMA_11G240200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004066	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006529	GO:GO:0006541	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009628	GO:GO:0009646	GO:GO:0009987	GO:GO:0042803	UniProt:I1LNK7	InterPro:IPR014729
InterPro:IPR017932	InterPro:IPR029055	EnsemblPlants:KRH31291	ProteinID:KRH31291	ProteinID:KRH31291.1	InterPro:Ntn_hydrolases_N
PFAM:PF00733	PFAM:PF13537	PIRSF:PIRSF001589	PFscan:PS51278	PANTHER:PTHR11772	PANTHER:PTHR11772:SF13
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	SUPFAM:SSF56235	UniParc:UPI000233C3D6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:33456451..33461778

Molecular Weight (calculated)

63768.8 Da

IEP (calculated)

6.370

GRAVY (calculated)

-0.334

Length

566 amino acids

Sequence
(BLAST)

001: MCGILAVLGC VDNSQAKRAR IIELSRRLRH RGPDWSGIDC YEDCYLAHQR LAIVDPTSGD QPLYNEDKTI VVTVNGEIYN HKQLRQKLSS HQFRTGSDCE
101: VIAHLYEEYG EEFVNMLDGM FAFILLDTRD KSFIAARDAI GITPLYLGWG HDGSTWFASE MKALSDDCER FIAFPPGHIY SSKQGGLRRW YNPPWFSEDI
201: PSTPYDPILL RETFERAVVK RLMTDVPFGV LLSGGLDSSL VASVVNRYLA ESETARQWGS QLHTFCIGLK GSPDLKAAKE VADYLGTRHH ELYFTVQEGI
301: DALEEVIYHI ETYDVTTIRA STPMFLMSRK IKALGVKMVL SGEGSDEIFG GYLYFHKAPN KKELHEETCQ KIKALHLYDC LRANKSTAAW GVEARVPFLD
401: KEFINVAMSI DPEWKMIRPD LGRIEKWVLR NAFDDDKNPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAN KQVTDATMMA ANFIYPENTP TTKEGYLYRT
501: IFEKFFPKNS AKATVPGGPS VACSTAKAVE WDASWSKNLD PSGRAALGVH AAAYDGAVDT TKNGPL

Best Arabidopsis Sequence Match ( AT5G10240.1 )
(BLAST)

001: MCGILAVLGC VDNSQAKRSR IIELSRRLRH RGPDWSGLHC YEDCYLAHER LAIVDPTSGD QPLYNEDKTI AVTVNGEIYN HKALRENLKS HQFRTGSDCE
101: VIAHLYEEHG EEFVDMLDGM FAFVLLDTRD KSFIAARDAI GITPLYIGWG LDGSVWFASE MKALSDDCEQ FMCFPPGHIY SSKQGGLRRW YNPPWFSEVV
201: PSTPYDPLVV RNTFEKAVIK RLMTDVPFGV LLSGGLDSSL VASVALRHLE KSEAACQWGS KLHTFCIGLK GSPDLKAGRE VADYLGTRHH ELHFTVQDGI
301: DAIEEVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGSDEIFG GYLYFHKAPN KKEFHEETCR KIKALHQYDC LRANKSTSAW GVEARVPFLD
401: KEFINVAMSI DPEWKMIRPD LGRIEKWVLR NAFDDEKNPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAN KHVSETMLMN ASFVFPDNTP LTKEAYYYRT
501: IFEKFFPKSA ARATVPGGPS VACSTAKAVE WDAAWSQNLD PSGRAALGVH VSAYGEDKTE DSRPEKLQKL AEKTPAIV

Arabidopsis Description

ASN3Asparagine synthetase [glutamine-hydrolyzing] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.