CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87183	Canola	cytosol	64.89	43.57
CDY01480	Canola	cytosol	63.83	42.86
CDY01568	Canola	cytosol	63.83	42.86
CDY50475	Canola	cytosol	63.83	42.86
CDY54341	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.83	42.86
CDY17904	Canola	cytosol	62.77	41.55
CDX86918	Canola	cytosol, mitochondrion	55.32	38.81
CDX81165	Canola	plastid	77.66	12.59
CDX78372	Canola	plastid	76.6	12.41
Solyc04g055200.2.1	Tomato	cytosol	51.06	12.03
AT5G10240.1	Thale cress	cytosol	71.28	11.59
CDY08829	Canola	cytosol	57.45	9.56
CDY14529	Canola	cytosol	57.45	9.56
Zm00001d045675_P003	Maize	extracellular	59.57	9.48
EER89574	Sorghum	cytosol	59.57	9.48
Os06t0265000-01	Rice	cytosol	58.51	9.31
TraesCS1B01G408200.1	Wheat	cytosol, plastid	56.38	9.03
TraesCS1D01G390500.1	Wheat	cytosol, plastid	56.38	8.97
TraesCS1A01G382800.1	Wheat	cytosol, mitochondrion	55.32	8.86
KRG97578	Soybean	cytosol	53.19	8.79
TraesCS1B01G453600.1	Wheat	cytosol, plastid	54.26	8.66
GSMUA_Achr9P15390_001	Banana	cytosol, mitochondrion	57.45	8.53
TraesCS1A01G422100.1	Wheat	cytosol, mitochondrion	53.19	8.49
KRH31291	Soybean	cytosol, nucleus	51.06	8.48
HORVU1Hr1G092110.4	Barley	cytosol, plastid	54.26	8.02
HORVU1Hr1G084370.2	Barley	plastid	54.26	7.76
CDY71298	Canola	cytosol	45.74	7.75
CDX99060	Canola	cytosol	45.74	7.35
CDY21785	Canola	cytosol	43.62	6.94
CDX77846	Canola	cytosol	43.62	6.93
TraesCS1D01G430300.1	Wheat	cytosol, mitochondrion	8.51	1.51
CDY51796	Canola	cytosol	3.19	1.33

Protein Annotations

EnsemblPlants:CDY23169	EnsemblPlantsGene:GSBRNA2T00021701001	ProteinID:CDY23169	ProteinID:CDY23169.1	UniParc:UPI0004EDEF9F	UniProt:A0A078GCV0
MapMan:35.1	:	:	:	:	:

Description

BnaA04g05900DBnaA04g05900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCV0]

Coordinates

chrLK032141:+:106218..106568

Molecular Weight (calculated)

10378.5 Da

IEP (calculated)

10.470

GRAVY (calculated)

-0.310

Length

94 amino acids

Sequence
(BLAST)

1: MMRRILIYRR FSNRAIFEKF FPKSAARATV PGGPSVPCST AKAVEWDAAW SQNLDLSGRA ALGVHVAAYE EDKAEGTRPK KLQKLAEKTA EAIV

Best Arabidopsis Sequence Match ( AT5G10240.1 )
(BLAST)

001: MCGILAVLGC VDNSQAKRSR IIELSRRLRH RGPDWSGLHC YEDCYLAHER LAIVDPTSGD QPLYNEDKTI AVTVNGEIYN HKALRENLKS HQFRTGSDCE
101: VIAHLYEEHG EEFVDMLDGM FAFVLLDTRD KSFIAARDAI GITPLYIGWG LDGSVWFASE MKALSDDCEQ FMCFPPGHIY SSKQGGLRRW YNPPWFSEVV
201: PSTPYDPLVV RNTFEKAVIK RLMTDVPFGV LLSGGLDSSL VASVALRHLE KSEAACQWGS KLHTFCIGLK GSPDLKAGRE VADYLGTRHH ELHFTVQDGI
301: DAIEEVIYHV ETYDVTTIRA STPMFLMSRK IKSLGVKMVL SGEGSDEIFG GYLYFHKAPN KKEFHEETCR KIKALHQYDC LRANKSTSAW GVEARVPFLD
401: KEFINVAMSI DPEWKMIRPD LGRIEKWVLR NAFDDEKNPY LPKHILYRQK EQFSDGVGYS WIDGLKDHAN KHVSETMLMN ASFVFPDNTP LTKEAYYYRT
501: IFEKFFPKSA ARATVPGGPS VACSTAKAVE WDAAWSQNLD PSGRAALGVH VSAYGEDKTE DSRPEKLQKL AEKTPAIV

Arabidopsis Description

ASN3Asparagine synthetase [glutamine-hydrolyzing] 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.