Factsheet for Solyc05g053230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069958	Potato	cytosol	99.44	99.44
Solyc12g098980.1.1	Tomato	nucleus, plastid	91.94	93.5
VIT_05s0020g00720.t01	Wine grape	cytosol	84.44	84.44
Os05t0135800-01	Rice	plasma membrane	80.28	80.06
Zm00001d010919_P001	Maize	cytosol, mitochondrion, plasma membrane	78.61	79.49
EES17666	Sorghum	cytosol	78.61	78.18
GSMUA_Achr8P10860_001	Banana	cytosol	78.61	78.18
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	78.33	77.9
TraesCS1D01G081400.3	Wheat	cytosol	78.06	77.62
Zm00001d008177_P001	Maize	cytosol, extracellular	76.67	77.31
KRH50647	Soybean	cytosol	75.83	75.83
OQU86753	Sorghum	cytosol	76.94	75.07
KRH02454	Soybean	cytosol	75.0	75.0
TraesCS1A01G079700.1	Wheat	mitochondrion	78.33	73.44
TraesCS1B01G097700.1	Wheat	golgi	78.06	73.18
Zm00001d024755_P004	Maize	plasma membrane	78.61	73.13
GSMUA_Achr3P01080_001	Banana	mitochondrion	69.17	68.59
Solyc12g098820.1.1	Tomato	cytosol, nucleus	68.89	68.51
Solyc10g080580.1.1	Tomato	cytosol	66.11	65.21
Solyc03g059080.1.1	Tomato	cytosol	65.56	63.78
Solyc10g078940.1.1	Tomato	cytosol, plastid	65.28	63.69
GSMUA_Achr3P12800_001	Banana	cytosol, mitochondrion	56.39	58.0
Solyc09g090210.2.1	Tomato	plasma membrane	51.11	51.4
Solyc09g098570.1.1	Tomato	mitochondrion	15.83	43.18

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
UniProt:K4C203	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF177	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc05g053230.2	EnsemblPlants:Solyc05g053230.2.1	UniParc:UPI00027662F8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:63358354..63362564

Molecular Weight (calculated)

39129.7 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.264

Length

360 amino acids

Sequence
(BLAST)

001: MSCFGCCDDD DMHKPADHGP FMTNNAAGYN AGQRVTESAQ RETQNVNILP IAVPSITVDE LKDITDNFGT KALIGEGSYG RVYHGVLKSG RAAAIKKLDS
101: SKQPDREFSA QVSMVSRLKH ENVVELLGYS VDGGLRVLAY EYAPNGSLHD ILHGRKGVKG AQPGPVLSWA QRVKIAVGAA KGLEYLHEKA QPHIIHRDIK
201: SSNVLLFDDD VAKIADFDLS NQAPDMAARL HSTRVLGTFG YHAPEYAMTG QLSSKSDVYS FGVVLLELLT GRKPVDHTLP RGQQSLVTWA TPRLSEDKVK
301: QCVDARLGTD YPPKAIAKMA AVAALCVQYE ADFRPNMSIV VKALQPLLHA RPAPSETSNL

Best Arabidopsis Sequence Match ( AT3G62220.3 )
(BLAST)

001: MSCFGCCRED DLPGANDYGG HNMTKQSGGN DGRRNGSETA QKGAQSVKVQ PIEVAAILAD ELIEATNDFG TNSLIGEGSY ARVYHGVLKN GQRAAIKKLD
101: SNKQPNEEFL AQVSMVSRLK HVNFVELLGY SVDGNSRILV FEFAQNGSLH DILHGRKGVK GAKPGPLLSW HQRVKIAVGA ARGLEYLHEK ANPHVIHRDI
201: KSSNVLIFDN DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GQLSAKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSLVTW ATPKLSEDKV
301: KQCVDSRLGG DYPPKAVAKL AAVAALCVQY EADFRPNMSI VVKALQPLLN ARTGPAGEGA P

Arabidopsis Description

At3g62220 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.