Factsheet for Solyc12g098980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053230.2.1	Tomato	nucleus	93.5	91.94
PGSC0003DMT400011940	Potato	cytosol	98.87	87.94
VIT_05s0020g00720.t01	Wine grape	cytosol	85.31	83.89
Os05t0135800-01	Rice	plasma membrane	81.07	79.5
Zm00001d010919_P001	Maize	cytosol, mitochondrion, plasma membrane	79.66	79.21
GSMUA_Achr11P...	Banana	cytosol, plasma membrane	80.79	79.01
GSMUA_Achr8P10860_001	Banana	cytosol	80.51	78.73
TraesCS1D01G081400.3	Wheat	cytosol	79.94	78.18
EES17666	Sorghum	cytosol	79.66	77.9
Zm00001d008177_P001	Maize	cytosol, extracellular	78.25	77.59
KRH50647	Soybean	cytosol	78.25	76.94
KRH02454	Soybean	cytosol	77.68	76.39
OQU86753	Sorghum	cytosol	78.53	75.34
TraesCS1B01G097700.1	Wheat	golgi	79.94	73.7
TraesCS1A01G079700.1	Wheat	mitochondrion	79.94	73.7
Zm00001d024755_P004	Maize	plasma membrane	79.66	72.87
GSMUA_Achr3P01080_001	Banana	mitochondrion	70.9	69.15
Solyc12g098820.1.1	Tomato	cytosol, nucleus	69.49	67.96
Solyc10g080580.1.1	Tomato	cytosol	66.67	64.66
Solyc10g078940.1.1	Tomato	cytosol, plastid	66.67	63.96
Solyc03g059080.1.1	Tomato	cytosol	66.67	63.78
GSMUA_Achr3P12800_001	Banana	cytosol, mitochondrion	57.63	58.29
Solyc09g090210.2.1	Tomato	plasma membrane	52.54	51.96
Solyc09g098570.1.1	Tomato	mitochondrion	16.38	43.94

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.38.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009626	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF177	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q41328	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g098980.1	EnsemblPlants:Solyc12g098980.1.1	EMBL:U28007
UniParc:UPI00000AB405	SEG:seg	:	:	:	:

Description

PTI1Pto-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q41328]

Coordinates

chr12:-:66308502..66312026

Molecular Weight (calculated)

38542.0 Da

IEP (calculated)

7.603

GRAVY (calculated)

-0.264

Length

354 amino acids

Sequence
(BLAST)

001: MSCFSCCDDD DMHRATDNGP FMAHNSAGNN GGQRATESAQ RETQTVNIQP IAVPSIAVDE LKDITDNFGS KALIGEGSYG RVYHGVLKSG RAAAIKKLDS
101: SKQPDREFLA QVSMVSRLKD ENVVELLGYC VDGGFRVLAY EYAPNGSLHD ILHGRKGVKG AQPGPVLSWA QRVKIAVGAA KGLEYLHEKA QPHIIHRDIK
201: SSNILLFDDD VAKIADFDLS NQAPDMAARL HSTRVLGTFG YHAPEYAMTG QLSSKSDVYS FGVVLLELLT GRKPVDHTLP RGQQSLVTWA TPRLSEDKVK
301: QCVDARLNTD YPPKAIAKMA AVAALCVQYE ADFRPNMSIV VKALQPLLPR PVPS

Best Arabidopsis Sequence Match ( AT3G17410.1 )
(BLAST)

001: MGCFGCCGGG EDFRRVSETG PKPVHNTGGY NGGHHQRADP PKNLPVIQMQ PISVAAIPAD ELRDITDNYG SKSLIGEGSY GRVFYGILKS GKAAAIKKLD
101: SSKQPDQEFL AQVSMVSRLR QENVVALLGY CVDGPLRVLA YEYAPNGSLH DILHGRKGVK GAQPGPVLSW HQRVKIAVGA ARGLEYLHEK ANPHVIHRDI
201: KSSNVLLFDD DVAKIADFDL SNQAPDMAAR LHSTRVLGTF GYHAPEYAMT GTLSTKSDVY SFGVVLLELL TGRKPVDHTL PRGQQSVVTW ATPKLSEDKV
301: KQCVDARLNG EYPPKAVAKL AAVAALCVQY EADFRPNMSI VVKALQPLLN PPRSAPQTPH RNPY

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LUT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.