Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plasma membrane | 94.26 | 94.4 |
| Solyc05g053610.2.1 | Tomato | plastid | 87.11 | 86.32 |
| PGSC0003DMT400034124 | Potato | plastid | 86.83 | 85.91 |
| Solyc09g091670.2.1 | Tomato | plastid | 79.53 | 78.64 |
| Solyc12g100190.1.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 77.34 | 76.47 |
| Solyc08g067610.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 70.47 | 68.43 |
| Solyc11g007290.1.1 | Tomato | cytosol, mitochondrion, peroxisome, plasma membrane, plastid | 60.2 | 57.94 |
| Solyc06g036240.1.1 | Tomato | cytosol | 22.59 | 49.84 |
| Solyc04g076170.1.1 | Tomato | cytosol | 5.81 | 43.39 |
| Solyc12g044580.1.1 | Tomato | plastid | 4.6 | 40.62 |
| Solyc02g055540.1.1 | Tomato | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 5.95 | 38.53 |
| Solyc09g042300.1.1 | Tomato | cytosol | 2.27 | 37.21 |
Protein Annotations
| MapMan:24.1.3.2.2 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABCG_PDR_1 | InterPro:ABCG_PDR_2 | InterPro:ABC_2_trans |
| InterPro:ABC_trans_N | InterPro:ABC_transporter-like | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
| GO:GO:0055085 | InterPro:IPR003439 | UniProt:K4C240 | InterPro:P-loop_NTPase | InterPro:PDR_assoc | PFAM:PF00005 |
| PFAM:PF01061 | PFAM:PF08370 | PFAM:PF14510 | PFscan:PS50893 | PANTHER:PTHR19241 | PANTHER:PTHR19241:SF444 |
| SMART:SM00382 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc05g053600.2 | EnsemblPlants:Solyc05g053600.2.1 | TMHMM:TMhelix | UniParc:UPI0002766518 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:63668524..63675423
Molecular Weight (calculated)
159718.0 Da
IEP (calculated)
7.586
GRAVY (calculated)
0.058
Length
1412 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGANLNNFR GSLRASMRGN SSNSIFSRSG RDEDDEEALK WAALEKLPTF DRMRKGLLFG KEGETISEVD TNDIGHQERK NLLDRLVKVA DEDNEKFLLK
0101: LKDRIETVGI DLPSIEVRYE HLNIAADAYV GSRALPTFIN FMTNSVETFL NTIHILPSRK RQITILNDVS GMIKPSRLTL LLGPPSSGKT TLLLALAGKL
0201: DPTLKVKGNV TYNGHELHEF VPQKTAVYIS QHDLHIGEMT VRETLEFSAR CQGVGPRYEM LAELSRREKA ANIKPDRDID IYMKASVAKG QEANIVTDYV
0301: LKILGLDICA DTMVGDEMLR GISGGQKKRV TTGEMLVGPS KALFMDEIST GLDSSTTFSI VNSLRQSVQL LKGTAVISLL QPAPETYNLF DDIILLSDAQ
0401: IVYQGPREDV LDFFESMGFK CPERKGVADF LQEVTSKKDQ QQYWAKKDEP YRFITSKEFA EAYQSFHVGK KLADELKTPY DKTKSHPAAL STKKYGIGMK
0501: QLLKVCADRE FLLMKRNSFV FIFKFFQLMV MAFIMMSIFF RTEMPRNNMD DGGMYAGALF FVVVVIMFNG MAEINLTILK LPVYFKQRDL LFYPSWAYAL
0601: PTWILKIPIT IVEVAIWTFL TYYVMGFDPN VSRLFKQFLL LVLVHQMASG LFRFIGAAGR TMGVATTFGA FALVLQFALS GFVLSRNDVK KWWIWGYWIS
0701: PLMYSVNSIL VNEFDGKKWD RIAPNGAESL GHAVLRSRGF FPDPYWYWIG VGALIGYIII FNLGYSIGLA YLNPFGKPQA ILSEDNETEQ LIEGSETEGQ
0801: DKKRGMVLPF EPHSITFDNI VYSVDMPQEI KDQGSTEDRL VLLKGVSGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGDIKISG YPKKQATFAR
0901: ISGYCEQNDI HSPYITVYES LVYSAWLRLP QDVDKNKRKM FVEEVMELVE LTPLRSALVG LPGVNGLSTE QRKRLTIAVE LVANPSIIFM DEPTSGLDAR
1001: AAAIVMRAVR NTVDTGRTVV CTIHQPSIDI FEAFDELLLM KRGGQEIYVG PLGRYSCHLI KYFESLPGVS KIKEAYNPAT WMLEVTAASQ EMMLGVDFTD
1101: LYKKSDLYKR NKALIAELST PRPGTTDLHF ETQFSQSFWT QCMACLWKQH LSYWRNPSYT AVRFIFTVIL ALVFGTLFWD LGSRLSRSQD LFNAMGSMYA
1201: ATLFLGVQNS SSAQPVVAVE RTVFYRERAA GMYSALPYAF GQVIVEIPYV FLQAVFYGII VYAMIGFEWT VAKFFWYLFI MYFTLLYFTF YGMLTVAVSP
1301: NQNVASIIAA FFYALWNLFS GFIVPRPRIP IWWRWYYWLC PVAWTLYGLV ASQFGDLQTM LSDDENVEQF LGRYFGFEHD FLGVVAAVIV VWPAVFAFLF
1401: AYAIKAFNFQ KR
0101: LKDRIETVGI DLPSIEVRYE HLNIAADAYV GSRALPTFIN FMTNSVETFL NTIHILPSRK RQITILNDVS GMIKPSRLTL LLGPPSSGKT TLLLALAGKL
0201: DPTLKVKGNV TYNGHELHEF VPQKTAVYIS QHDLHIGEMT VRETLEFSAR CQGVGPRYEM LAELSRREKA ANIKPDRDID IYMKASVAKG QEANIVTDYV
0301: LKILGLDICA DTMVGDEMLR GISGGQKKRV TTGEMLVGPS KALFMDEIST GLDSSTTFSI VNSLRQSVQL LKGTAVISLL QPAPETYNLF DDIILLSDAQ
0401: IVYQGPREDV LDFFESMGFK CPERKGVADF LQEVTSKKDQ QQYWAKKDEP YRFITSKEFA EAYQSFHVGK KLADELKTPY DKTKSHPAAL STKKYGIGMK
0501: QLLKVCADRE FLLMKRNSFV FIFKFFQLMV MAFIMMSIFF RTEMPRNNMD DGGMYAGALF FVVVVIMFNG MAEINLTILK LPVYFKQRDL LFYPSWAYAL
0601: PTWILKIPIT IVEVAIWTFL TYYVMGFDPN VSRLFKQFLL LVLVHQMASG LFRFIGAAGR TMGVATTFGA FALVLQFALS GFVLSRNDVK KWWIWGYWIS
0701: PLMYSVNSIL VNEFDGKKWD RIAPNGAESL GHAVLRSRGF FPDPYWYWIG VGALIGYIII FNLGYSIGLA YLNPFGKPQA ILSEDNETEQ LIEGSETEGQ
0801: DKKRGMVLPF EPHSITFDNI VYSVDMPQEI KDQGSTEDRL VLLKGVSGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGDIKISG YPKKQATFAR
0901: ISGYCEQNDI HSPYITVYES LVYSAWLRLP QDVDKNKRKM FVEEVMELVE LTPLRSALVG LPGVNGLSTE QRKRLTIAVE LVANPSIIFM DEPTSGLDAR
1001: AAAIVMRAVR NTVDTGRTVV CTIHQPSIDI FEAFDELLLM KRGGQEIYVG PLGRYSCHLI KYFESLPGVS KIKEAYNPAT WMLEVTAASQ EMMLGVDFTD
1101: LYKKSDLYKR NKALIAELST PRPGTTDLHF ETQFSQSFWT QCMACLWKQH LSYWRNPSYT AVRFIFTVIL ALVFGTLFWD LGSRLSRSQD LFNAMGSMYA
1201: ATLFLGVQNS SSAQPVVAVE RTVFYRERAA GMYSALPYAF GQVIVEIPYV FLQAVFYGII VYAMIGFEWT VAKFFWYLFI MYFTLLYFTF YGMLTVAVSP
1301: NQNVASIIAA FFYALWNLFS GFIVPRPRIP IWWRWYYWLC PVAWTLYGLV ASQFGDLQTM LSDDENVEQF LGRYFGFEHD FLGVVAAVIV VWPAVFAFLF
1401: AYAIKAFNFQ KR
0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR
Arabidopsis Description
ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.