Factsheet for PGSC0003DMT400034124

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053610.2.1	Tomato	plastid	97.97	98.11
PGSC0003DMT400034141	Potato	mitochondrion	5.61	90.91
Solyc05g053570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	87.6	88.65
Solyc05g053600.2.1	Tomato	extracellular, nucleus	85.91	86.83
PGSC0003DMT400049311	Potato	cytosol, peroxisome, vacuole	18.43	86.8
VIT_09s0002g05380.t01	Wine grape	cytosol	8.62	83.11
PGSC0003DMT400049314	Potato	cytosol	9.6	80.59
VIT_09s0018g00900.t01	Wine grape	mitochondrion	7.85	78.87
VIT_09s0002g05490.t01	Wine grape	mitochondrion	68.19	76.08
KRH09796	Soybean	mitochondrion	74.63	74.68
VIT_09s0002g05590.t01	Wine grape	plasma membrane	75.68	74.28
VIT_09s0002g05600.t01	Wine grape	mitochondrion	74.98	73.79
VIT_09s0002g05570.t01	Wine grape	plasma membrane	74.98	73.59
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	74.63	73.0
VIT_09s0002g05360.t01	Wine grape	plasma membrane	75.61	72.46
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	72.95	72.44
CDY65846	Canola	mitochondrion, plastid	14.65	70.13
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	75.75	69.12
KXG32868	Sorghum	plasma membrane	69.87	68.62
OQU87144	Sorghum	plasma membrane	61.46	68.46
KRH67473	Soybean	endoplasmic reticulum	56.97	66.48
KRG95761	Soybean	cytosol	17.17	65.16
PGSC0003DMT400074382	Potato	cytosol	4.98	63.39
PGSC0003DMT400092002	Potato	cytosol	7.15	59.65
PGSC0003DMT400050157	Potato	plasma membrane	9.04	58.9
PGSC0003DMT400090739	Potato	plasma membrane	46.32	57.73
KRH67875	Soybean	plastid	31.25	55.2
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	7.5	52.97
PGSC0003DMT400048849	Potato	extracellular, plasma membrane, plastid	3.99	50.44
PGSC0003DMT400018880	Potato	plasma membrane	12.75	48.4

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1B064	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061
PFAM:PF08370	PFAM:PF14510	EnsemblPlantsGene:PGSC0003DMG401013112	PGSC:PGSC0003DMG401013112	EnsemblPlants:PGSC0003DMT400034124	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF444	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295CF15
SEG:seg	:	:	:	:	:

Description

Pleiotropic drug resistance protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401013112]

Coordinates

chr5:-:49017241..49024595

Molecular Weight (calculated)

161065.0 Da

IEP (calculated)

7.377

GRAVY (calculated)

0.032

Length

1427 amino acids

Sequence
(BLAST)

0001: MEPVNLNSMR GSSMRGSMRG SLRASTSNSI WRNNGVDAFS RSARDEDDEE ALKWAALEKL PTFDRLRKGL LFGSQGAANE IDVNDLGYQE RKNLLERLVK
0101: VADEDNEKFL MKLKNRIDRV GIDMPSIEVR YEHLNIEADA YAGSRALPTF LNFMTNFVES LLNSLHILPS KKRQITILKD ISGMIKPCRM TLLLGPPSSG
0201: KTTLLLALAG KLDPALKVTG NVTYNGHELH EFVPQRTAVY ISQHDLHIGE MTVRETLEFS ARCQGVGSRF EMLAELSRRE KAANIKPDPD IDIYMKAAAT
0301: EGQEANVVTD YVLKILGLDI CADTMVGDEM IRGISGGQKK RVTTGEMLVG PSKALFMDEI STGLDSSTTF SIVNSLRQTV QLLKGTAVIS LLQPAPETYN
0401: LFDDIILLSD GYIVYQGPRE AILDFFESMG FKCPERKGAA DFLQEVTSKK DQQQYWAKRN ESYRFVTSKE FAEAYQSFHV GRKLSDELAT PYDKTKSHPA
0501: ALSTKKYGIG TKQLLKVCAE REFLLMKRNS FVYTFKLTQL AIMALITMSV FFRTKLPRDD MDDGGIYAGA LFFVVVMIMF NGMAEIALTI FKLPVYFKQR
0601: DLLFYPSWAY ALPTWILKIP ITFVECGMWT FLTYYVMGFD PNVSRLFKQF LLLVLVHQMA SALFRFIGAV GRTMGVASTF GAFALLLQFA LGGFVLARED
0701: VKKWWIWGYW TSPLMYSVNS ILVNEFDGKN WKHIAPNGTE PLGAAVIRSR GFFPDAYWYW IGCGALLGFT LIFNFFYSIA LAYLDPFGKP QAMISEDGEN
0801: ADNVELMERS ETEGQEKKKG MVLPFEPHSI TFDNVVYSVD MPQEMKEQGS AEDRLVLLKG VSGAFRPGVL TALMGVSGAG KTTLMDVLAG RKTGGYIDGD
0901: IKISGYPKKQ ETFARISGYC EQNDIHSPYV TVYESLVYSA WLRLPQDVDE NKRKMFVDEV MELVELAPLR SALVGLPGVN GLSTEQRKRL TIAVELVANP
1001: SIIFMDEPTS GLDARAAAIV MRAVRNTVDT GRTVVCTIHQ PSIDIFEAFD ELFLMKRGGQ EIYVGPLGRH SCHLIKYFES LPGVSKIKEA YNPATWMLEV
1101: TASSQEMMLG VDFADLYKNS DLYRRNKALI AELSTPRPGT KDLHFETQFS QPFWTQCMAC LWKQHWSYWR NPSYTAVRFI FTTFIALVFG TMFWDLGTKV
1201: SRSQDLINAM GSMYAATLFL GVQNSSSVQP VVAVERTVFY REKAAGMYSA IPYAFGQVVI EIPYVFVQSA VYGLIVYAMI GFEWTAVKFL WYFFFMYCTL
1301: LYFTFYGMMT VAVTPNQNVA SIVAAFFYAV WNLFSGFIVP RPRIPIWWRW YYWACPVAWT LYGLVASQFG DIQTPLTDDE NVEQFLRRYF GFKHDFLGVV
1401: AAVIAALPVM FALTFALGIK AFNFQRR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.