Factsheet for VIT_09s0002g05600.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05490.t01	Wine grape	mitochondrion	79.59	90.23
VIT_09s0002g05380.t01	Wine grape	cytosol	8.97	87.84
VIT_09s0002g06940.t01	Wine grape	cytosol	14.34	86.67
VIT_09s0002g05590.t01	Wine grape	plasma membrane	86.21	85.97
VIT_09s0002g05570.t01	Wine grape	plasma membrane	85.52	85.28
VIT_09s0002g05360.t01	Wine grape	plasma membrane	86.83	84.55
VIT_09s0002g05440.t01	Wine grape	cytosol	7.45	84.38
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	84.9	84.37
VIT_09s0002g05510.t01	Wine grape	cytosol	11.79	83.82
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	82.97	83.72
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	87.93	81.52
VIT_09s0002g05540.t01	Wine grape	extracellular, golgi	4.48	81.25
VIT_09s0018g00900.t01	Wine grape	mitochondrion	7.86	80.28
VIT_12s0057g00280.t01	Wine grape	cytosol	3.38	79.03
VIT_02s0012g02770.t01	Wine grape	cytosol	4.83	76.92
PGSC0003DMT400034124	Potato	plastid	73.79	74.98
VIT_09s0002g05470.t01	Wine grape	cytosol	13.72	74.53
VIT_04s0008g04820.t01	Wine grape	plastid	71.17	72.73
VIT_04s0008g04830.t01	Wine grape	cytosol, plastid	37.31	70.9
CDY65846	Canola	mitochondrion, plastid	14.48	70.47
VIT_07s0005g02330.t01	Wine grape	cytosol	6.62	65.31
VIT_09s0002g06930.t01	Wine grape	mitochondrion	11.93	64.79
VIT_13s0074g00690.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.76	61.83
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.79	61.01
VIT_06s0061g01480.t01	Wine grape	plastid	61.24	60.82
VIT_09s0002g03550.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	27.1	60.65
VIT_09s0002g03560.t01	Wine grape	endoplasmic reticulum, golgi, plastid	17.72	60.33
VIT_09s0002g03640.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	61.79	60.01
VIT_13s0074g00700.t01	Wine grape	plastid	61.24	60.0
VIT_13s0074g00660.t01	Wine grape	plastid	60.83	59.92
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	58.69	59.89
VIT_06s0061g01470.t01	Wine grape	mitochondrion	45.93	59.36
VIT_11s0016g04590.t01	Wine grape	cytosol	60.14	59.04
VIT_09s0002g03570.t01	Wine grape	plasma membrane	12.9	58.07
VIT_06s0080g00040.t01	Wine grape	plastid	60.21	57.97
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	8.07	57.92
VIT_04s0043g00970.t01	Wine grape	mitochondrion	6.14	57.79
VIT_14s0030g00590.t01	Wine grape	cytosol	6.55	57.58
VIT_09s0002g03630.t01	Wine grape	plasma membrane	55.59	57.16
VIT_05s0020g00680.t01	Wine grape	plastid	53.17	53.65
VIT_09s0002g03580.t01	Wine grape	plasma membrane	24.97	52.46
VIT_18s0001g10650.t01	Wine grape	mitochondrion	6.07	52.38
VIT_09s0002g05450.t01	Wine grape	mitochondrion	7.79	48.29
VIT_06s0080g00050.t01	Wine grape	plasma membrane	5.1	44.58
VIT_07s0005g02250.t01	Wine grape	plasma membrane	10.21	44.58
VIT_07s0005g02320.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	5.45	43.41
VIT_06s0061g01460.t01	Wine grape	endoplasmic reticulum, plasma membrane	3.86	41.18
VIT_07s0005g02240.t01	Wine grape	cytosol, golgi, mitochondrion, nucleus	11.45	35.55
VIT_07s0005g02350.t01	Wine grape	cytosol, nucleus, peroxisome	5.79	34.15

Protein Annotations

EntrezGene:100232918	wikigene:100232918	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AAO12868
ProteinID:AAO12868.1	EntrezGene:ABC	wikigene:ABC	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:AM449250	EMBL:AY159558	ProteinID:CAN61052	ProteinID:CAN61052.1
ProteinID:CCB59539	ProteinID:CCB59539.1	UniProt:F6HX69	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	InterPro:PDR_assoc
PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF444	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC52844	TMHMM:TMhelix	UniParc:UPI000210A781
ArrayExpress:VIT_09s0002g05600	EnsemblPlantsGene:VIT_09s0002g05600	EnsemblPlants:VIT_09s0002g05600.t01	RefSeq:XP_002285178	RefSeq:XP_002285178.2	RefSeq:XP_003632876
RefSeq:XP_003632876.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:5336090..5343699

Molecular Weight (calculated)

163910.0 Da

IEP (calculated)

6.899

GRAVY (calculated)

0.007

Length

1450 amino acids

Sequence
(BLAST)

0001: MATAEIYRAA GSLRRNGSMW RSSGADVFSR SSRDEDDEEA LKWAALEKLP TYNRLRKGLL MGSQGAASEV DVDNLGYQEK QSLMERLVKI AEEDNEKFLL
0101: RLRNRIERVG ITIPEIEVRF EHLTIDAEAF IGSRALPSFH NFMFNKIEDA LTGLRILPSR RRKFTILHDV SGIIKPQRMT LLLGPPSSGK TTLLLALSGK
0201: LDPTLKVTGR VTYNGHGMDE FVPQRTAAYI SQHDTHIGEM TVRETLAFSA RCQGVGDRYD MLAELSRREK AANIKPDPDL DVFMKAAATE GQKENVVTDY
0301: TLKILGLDIC ADTMVGDEMI RGISGGQRKR VTTGEMLVGP SKALFMDEIS TGLDSSTTFQ IVNCLKQTIH ILNGTAVISL LQPAPETYNL FDDIILLSDG
0401: RIIYQGPRED VLEFFESTGF RCPERKGVAD FLQEVTSKKD QQQYWARKEE PYRFVTVKEF AEAFQSFHTG RKVGDELASP YDKTKSHPAA LTTKKYGVNK
0501: KELLDANMSR EYLLMKRNSF VYVFKLTQLA IMAVITMTLF LRTEMHKNSV DDGNIYTGAL FFTVVMIMFN GMAELAMAIA KLPVFYKQRD LLFYPAWAYA
0601: LPTWILKIPI TFIEVGVWVF MTYYVIGFDP NVERLFRQYL LLLLVNQMAS GLFRLIASAG RNMIVSNTFG AFVLLMLLAL GGFILSHDDV KKWWIWGYWC
0701: SPLMYAQNAI VVNEFLGHSW KKNVTGSTES LGVTVLNNRG FFTEAYWYWI GAGALFGFIL LFNFGYTLCL NFLNPFDKPQ AVIVEESDNA ETGGQIELSQ
0801: RNSSIDQAAS TERGEEIGRS ISSTSSAVRE EAVAGANHNK KKGMVLPFQP YSITFDDIRY SVDMPEEMKS QGVVEDKLEL LKGVSGAFRP GVLTALMGVS
0901: GAGKTTLMDV LAGRKTGGYI EGNITISGYP KKQETFARIS GYCEQNDIHS PHVTVYESLL YSAWLRLPSD VKSETRQMFI EEVMELVELT PLRDALVGLP
1001: GVSGLSTEQR KRLTIAVELV ANPSIIFMDE PTSGLDARAA AIVMRTVRNT VDTGRTVVCT IHQPSIDIFE AFDELLLLKR GGQEIYVGPL GRYSCHLINY
1101: FEGIEGVSKI KDGYNPATWM LEATTAAQEA TLGVDFTEIY KNSDLYRRNK DLIKELSQPP PGTKDLYFRT QFSQPFFTQF LACLWKQRWS YWRNPPYTAV
1201: RFLFTTFIAL MFGTMFWDLG TKWSTQQDLF NAMGSMYAAV LFLGIQNSQS VQPVVVVERT VFYRERAAGM YSPLSYAFAQ ALVEIPYIFS QAVVYGLIVY
1301: AMIGFQWTAA KFFWYLFFMF FTLMYFTFYG MMAVAATPNQ NIASIVAAAF YGLWNLFSGF IVPRNRIPVW WRWYYWICPV SWTLYGLVTS QFGDITEELN
1401: TGVTVKDYLN DYFGFKHDFL GVVAAVVVGF VVLFLFIFAY AIKALNFQRR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.