Factsheet for VIT_09s0002g06930.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g00900.t01	Wine grape	mitochondrion	26.59	50.0
VIT_09s0002g05380.t01	Wine grape	cytosol	26.59	47.97
VIT_07s0005g02330.t01	Wine grape	cytosol	21.72	39.46
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	18.73	24.75
VIT_09s0002g05470.t01	Wine grape	cytosol	24.72	24.72
VIT_09s0002g03550.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	53.18	21.91
VIT_04s0008g04830.t01	Wine grape	cytosol, plastid	55.81	19.53
VIT_09s0002g05490.t01	Wine grape	mitochondrion	65.54	13.68
VIT_09s0002g03580.t01	Wine grape	plasma membrane	33.33	12.9
VIT_09s0002g05590.t01	Wine grape	plasma membrane	65.92	12.1
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	64.79	12.04
VIT_09s0002g05570.t01	Wine grape	plasma membrane	65.54	12.04
VIT_09s0002g05600.t01	Wine grape	mitochondrion	64.79	11.93
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	65.17	11.93
VIT_09s0002g05360.t01	Wine grape	plasma membrane	62.92	11.28
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	64.42	11.0
VIT_07s0005g02350.t01	Wine grape	cytosol, nucleus, peroxisome	10.11	10.98
VIT_04s0008g04820.t01	Wine grape	plastid	55.06	10.36
VIT_06s0061g01480.t01	Wine grape	plastid	55.06	10.07
VIT_13s0074g00700.t01	Wine grape	plastid	55.43	10.0
VIT_13s0074g00660.t01	Wine grape	plastid	54.68	9.92
VIT_06s0080g00040.t01	Wine grape	plastid	55.43	9.83
VIT_09s0002g03640.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	53.56	9.58
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.81	9.36
VIT_06s0061g01470.t01	Wine grape	mitochondrion	39.33	9.36
VIT_11s0016g04590.t01	Wine grape	cytosol	50.94	9.21
VIT_13s0074g00690.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.44	9.0
TraesCS3B01G319000.1	Wheat	plastid	48.31	8.82
TraesCS3A01G285100.1	Wheat	plastid	47.94	8.76
HORVU3Hr1G068750.2	Barley	plastid	47.94	8.76
VIT_05s0020g00680.t01	Wine grape	plastid	46.82	8.7
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	45.32	8.52
KRH05086	Soybean	plasma membrane	38.95	8.25
Bra037088.1-P	Field mustard	cytosol	42.7	8.17
CDY08278	Canola	cytosol, nucleus, plasma membrane	42.7	8.17
AT4G15215.11	Thale cress	cytosol	41.57	7.95
AT4G15230.1	Thale cress	cytosol	41.2	7.86
VIT_09s0002g03630.t01	Wine grape	plasma membrane	39.7	7.52
VIT_07s0005g02240.t01	Wine grape	cytosol, golgi, mitochondrion, nucleus	12.73	7.28
Zm00001d019951_P001	Maize	plasma membrane	16.85	3.68
TraesCS3D01G284900.1	Wheat	plasma membrane	14.98	3.47
VIT_06s0080g00050.t01	Wine grape	plasma membrane	1.5	2.41
VIT_04s0043g00970.t01	Wine grape	mitochondrion	1.12	1.95
VIT_14s0030g00590.t01	Wine grape	cytosol	1.12	1.82
VIT_07s0005g02250.t01	Wine grape	plasma membrane	0.37	0.3
CDY58246	Canola	plasma membrane	0.0	0.0
VIT_09s0002g05450.t01	Wine grape	mitochondrion	0.0	0.0
VIT_18s0001g10650.t01	Wine grape	mitochondrion	0.0	0.0
CDY58249	Canola	plasma membrane	0.0	0.0
VIT_02s0012g02770.t01	Wine grape	cytosol	0.0	0.0
VIT_12s0057g00280.t01	Wine grape	cytosol	0.0	0.0
VIT_06s0061g01460.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.0	0.0
VIT_09s0002g06940.t01	Wine grape	cytosol	0.0	0.0
VIT_07s0005g02320.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	0.0	0.0
VIT_09s0002g03560.t01	Wine grape	endoplasmic reticulum, golgi, plastid	0.0	0.0
VIT_09s0002g05540.t01	Wine grape	extracellular, golgi	0.0	0.0
VIT_09s0002g03570.t01	Wine grape	plasma membrane	0.0	0.0
VIT_09s0002g05510.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0002g05440.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:ABC_transporter-like	EMBL:AM475570	ProteinID:CAN75124	ProteinID:CAN75124.1
ProteinID:CCB59607	ProteinID:CCB59607.1	UniProt:F6HXD7	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
PANTHER:PTHR19241	PANTHER:PTHR19241:SF443	SUPFAM:SSF52540	UniParc:UPI000210A228	ArrayExpress:VIT_09s0002g06930	EnsemblPlantsGene:VIT_09s0002g06930
EnsemblPlants:VIT_09s0002g06930.t01	RefSeq:XP_003632812	RefSeq:XP_003632812.1	:	:	:

Description

No Description!

Coordinates

chr9:+:6851591..6853645

Molecular Weight (calculated)

29781.8 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.251

Length

267 amino acids

Sequence
(BLAST)

001: MASAEITRTR ASLRRTGSRF WTSSGREVFS RSARDEDDEE ALKWAVIQKL PTYNRLKKGL LKGSEGDFSE VDIQNLGSRE KKNLLERLVK TAVLKVHQDF
101: LHNQTAFYDF LIMGFRVASI FFRVGIVLPE VEVTGKVTYN GHGMEEFVPQ RTAAYIGQHD NHIGEMTVRE TLAFSAICQG VGFRYEMLAE LARREKEANI
201: KPDPDIDVFM KILGLDVCAD TMVGNAMLRG ISGGQKKRVT TGEMLVGPAT ALFMDEISTG LDSSTTS

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.