Factsheet for VIT_09s0002g06940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05440.t01	Wine grape	cytosol	42.5	79.69
VIT_09s0002g05510.t01	Wine grape	cytosol	66.25	77.94
VIT_12s0057g00280.t01	Wine grape	cytosol	11.25	43.55
VIT_09s0002g03560.t01	Wine grape	endoplasmic reticulum, golgi, plastid	71.25	40.14
VIT_02s0012g02770.t01	Wine grape	cytosol	12.5	32.97
VIT_04s0043g00970.t01	Wine grape	mitochondrion	15.83	24.68
VIT_14s0030g00590.t01	Wine grape	cytosol	16.67	24.24
VIT_18s0001g10650.t01	Wine grape	mitochondrion	14.58	20.83
VIT_06s0061g01470.t01	Wine grape	mitochondrion	78.33	16.76
VIT_09s0002g05490.t01	Wine grape	mitochondrion	86.67	16.26
TraesCS3D01G284900.1	Wheat	plasma membrane	75.83	15.8
KRH05086	Soybean	plasma membrane	77.5	14.76
VIT_09s0002g05590.t01	Wine grape	plasma membrane	87.08	14.37
VIT_09s0002g05600.t01	Wine grape	mitochondrion	86.67	14.34
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	85.83	14.34
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	86.25	14.19
VIT_09s0002g05570.t01	Wine grape	plasma membrane	85.42	14.1
VIT_09s0002g05360.t01	Wine grape	plasma membrane	85.83	13.83
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	86.67	13.3
VIT_06s0061g01480.t01	Wine grape	plastid	80.42	13.22
VIT_04s0008g04820.t01	Wine grape	plastid	77.92	13.18
Zm00001d019951_P001	Maize	plasma membrane	66.67	13.07
VIT_09s0002g03630.t01	Wine grape	plasma membrane	76.67	13.05
VIT_13s0074g00690.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.58	12.99
VIT_06s0080g00040.t01	Wine grape	plastid	80.0	12.75
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	75.0	12.67
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.17	12.53
TraesCS3A01G285100.1	Wheat	plastid	75.83	12.45
TraesCS3B01G319000.1	Wheat	plastid	75.42	12.38
HORVU3Hr1G068750.2	Barley	plastid	75.42	12.38
VIT_13s0074g00700.t01	Wine grape	plastid	76.25	12.36
VIT_11s0016g04590.t01	Wine grape	cytosol	74.58	12.12
VIT_13s0074g00660.t01	Wine grape	plastid	74.17	12.09
VIT_09s0002g03640.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	75.0	12.06
VIT_05s0020g00680.t01	Wine grape	plastid	70.0	11.69
Bra037088.1-P	Field mustard	cytosol	65.83	11.33
CDY08278	Canola	cytosol, nucleus, plasma membrane	65.42	11.25
CDY58249	Canola	plasma membrane	19.58	11.08
AT4G15215.11	Thale cress	cytosol	63.33	10.88
CDY58246	Canola	plasma membrane	19.17	10.8
AT4G15230.1	Thale cress	cytosol	62.92	10.79
VIT_07s0005g02250.t01	Wine grape	plasma membrane	8.75	6.33
VIT_07s0005g02330.t01	Wine grape	cytosol	1.67	2.72
VIT_07s0005g02240.t01	Wine grape	cytosol, golgi, mitochondrion, nucleus	4.58	2.36
VIT_09s0002g05450.t01	Wine grape	mitochondrion	2.08	2.14
VIT_06s0080g00050.t01	Wine grape	plasma membrane	1.25	1.81
VIT_09s0002g03570.t01	Wine grape	plasma membrane	0.42	0.31
VIT_09s0002g03580.t01	Wine grape	plasma membrane	0.83	0.29
VIT_04s0008g04830.t01	Wine grape	cytosol, plastid	0.83	0.26
VIT_09s0018g00900.t01	Wine grape	mitochondrion	0.0	0.0
VIT_09s0002g03550.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	0.0	0.0
VIT_07s0005g02350.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0
VIT_09s0002g06930.t01	Wine grape	mitochondrion	0.0	0.0
VIT_07s0005g02320.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	0.0	0.0
VIT_09s0002g05380.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0002g05540.t01	Wine grape	extracellular, golgi	0.0	0.0
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	0.0	0.0
VIT_06s0061g01460.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.0	0.0
VIT_09s0002g05470.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2	InterPro:ABC_transporter-like	ProteinID:CCB59608
ProteinID:CCB59608.1	UniProt:F6HXD8	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF437	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000210A229	ArrayExpress:VIT_09s0002g06940	EnsemblPlantsGene:VIT_09s0002g06940
EnsemblPlants:VIT_09s0002g06940.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:6855192..6856773

Molecular Weight (calculated)

26050.7 Da

IEP (calculated)

9.029

GRAVY (calculated)

-0.163

Length

240 amino acids

Sequence
(BLAST)

001: MPAEMKSQGV PGDKLELLKG VSGAFRPGVL TALMGVSGAG KTTLMDVLAG RKSGGYIKGN ISISGYPKKQ ETFARISGYC EQNDIHSPHV TVYESLLYSA
101: WLRLPPDVNS KTRKMFNMEV MDLVELTPLK NALVGLPGVN LSTEQRKRLT IAVEPVANPS IIFMDEPTSG PDARAAAIVM RTMRNAVDTG RTVVCAIHQP
201: SIDIFEAFDE VGNGIEGVGK IEDGYNPATW MSKFPLRHKK

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.