Factsheet for VIT_06s0080g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g01480.t01	Wine grape	plastid	90.37	93.22
VIT_06s0061g01470.t01	Wine grape	mitochondrion	65.14	87.43
VIT_09s0002g06940.t01	Wine grape	cytosol	12.75	80.0
VIT_09s0002g05380.t01	Wine grape	cytosol	7.77	79.05
VIT_09s0002g05510.t01	Wine grape	cytosol	10.43	76.96
VIT_09s0002g05440.t01	Wine grape	cytosol	6.44	75.78
VIT_13s0074g00690.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.79	75.18
VIT_13s0074g00660.t01	Wine grape	plastid	72.31	73.98
VIT_13s0074g00700.t01	Wine grape	plastid	72.51	73.78
KRG96158	Soybean	endoplasmic reticulum	70.25	72.76
VIT_07s0005g02330.t01	Wine grape	cytosol	6.77	69.39
VIT_12s0057g00280.t01	Wine grape	cytosol	2.86	69.35
Solyc11g007290.1.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	67.33	69.12
VIT_02s0012g02770.t01	Wine grape	cytosol	3.98	65.93
VIT_09s0018g00900.t01	Wine grape	mitochondrion	6.18	65.49
VIT_09s0002g05470.t01	Wine grape	cytosol	11.02	62.17
Os10t0205500-01	Rice	cytosol, mitochondrion, peroxisome	12.55	61.97
VIT_09s0002g05490.t01	Wine grape	mitochondrion	51.59	60.75
VIT_09s0002g05600.t01	Wine grape	mitochondrion	57.97	60.21
VIT_09s0002g05590.t01	Wine grape	plasma membrane	57.97	60.04
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	57.84	59.7
VIT_09s0002g05570.t01	Wine grape	plasma membrane	57.37	59.42
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	56.57	59.29
VIT_04s0008g04820.t01	Wine grape	plastid	54.65	58.0
VIT_06s0080g00050.t01	Wine grape	plasma membrane	6.37	57.83
VIT_09s0002g05360.t01	Wine grape	plasma membrane	56.77	57.42
VIT_09s0002g03550.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	24.57	57.1
VIT_09s0002g03560.t01	Wine grape	endoplasmic reticulum, golgi, plastid	16.07	56.81
VIT_04s0008g04830.t01	Wine grape	cytosol, plastid	28.69	56.62
VIT_06s0061g01460.t01	Wine grape	endoplasmic reticulum, plasma membrane	5.11	56.62
VIT_09s0002g05540.t01	Wine grape	extracellular, golgi	2.99	56.25
VIT_09s0002g03640.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	55.25	55.73
VIT_09s0002g06930.t01	Wine grape	mitochondrion	9.83	55.43
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	52.26	55.38
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	57.5	55.37
VIT_09s0002g03630.t01	Wine grape	plasma membrane	50.66	54.11
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	51.0	54.05
VIT_11s0016g04590.t01	Wine grape	cytosol	50.66	51.66
VIT_09s0002g03580.t01	Wine grape	plasma membrane	23.64	51.59
TraesCS4A01G372100.1	Wheat	cytosol, peroxisome, plasma membrane	48.94	51.57
VIT_05s0020g00680.t01	Wine grape	plastid	49.14	51.5
VIT_04s0043g00970.t01	Wine grape	mitochondrion	5.18	50.65
VIT_09s0002g03570.t01	Wine grape	plasma membrane	10.43	48.76
VIT_14s0030g00590.t01	Wine grape	cytosol	5.25	47.88
VIT_18s0001g10650.t01	Wine grape	mitochondrion	5.18	46.43
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	5.38	40.1
VIT_07s0005g02250.t01	Wine grape	plasma membrane	8.43	38.25
VIT_07s0005g02240.t01	Wine grape	cytosol, golgi, mitochondrion, nucleus	10.96	35.33
VIT_09s0002g05450.t01	Wine grape	mitochondrion	5.25	33.76
VIT_07s0005g02320.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	4.05	33.52
VIT_07s0005g02350.t01	Wine grape	cytosol, nucleus, peroxisome	5.31	32.52

Protein Annotations

EntrezGene:100251704	wikigene:100251704	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	ProteinID:CCB51672	ProteinID:CCB51672.1	UniProt:F6HHH6
EMBL:FN595757	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	EntrezGene:LOC100251704	wikigene:LOC100251704	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF429
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC55568	TMHMM:TMhelix	UniParc:UPI00021084A8	ArrayExpress:VIT_06s0080g00040
EnsemblPlantsGene:VIT_06s0080g00040	EnsemblPlants:VIT_06s0080g00040.t01	unigene:Vvi.10979	RefSeq:XP_002265364	RefSeq:XP_002265364.2	RefSeq:XP_003632285
RefSeq:XP_003632285.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:19714042..19723700

Molecular Weight (calculated)

170296.0 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.003

Length

1506 amino acids

Sequence
(BLAST)

0001: MAAALAGDDL PRSGSMASSS RSWRSASIRE VSNALDEFQR SGRQVADDEE KLKWAAIERL PTYDRMRKGM LKQVMSNGRI VQNEVDVTHL GAQDKKQLME
0101: SILKVVEDDN ERFLRSLRDR TYRVGIEIPK IEVRFQNLSI EGDGYVGTRA IPTLLNSTLN AVEGVMRMIG LSPSKKRVVK ILQNVSGIIR PSRMTLLLGP
0201: PASGKTTFLK ALSREQDDDL RMTGKITYCG HEFSEFVPQR TCAYISQHDL HHGEMTVRET LNFSGRCLGV GTRYEMLVEL SRREKEAGIK PDPEIDAFMK
0301: ATAMAGQETS LMTDYVLKIL GLDICADIMV GDEMRRGISG GQKKRVTTGE MLVGPAKAFF MDEISTGLDS STTFQIVKFL KQMVHIMDIT MVISLLQPPP
0401: ETYDLFDDII LLSEGKIVYQ GPRENVLEFF EHMGFRLPDR KGVADFLQEV TSKKEQEQYW FRKNQPYRYI SVPEFARSFD SFHVGQQILE DIGVPYDKSK
0501: AHPAALVKEK YGISNWELFR ACFLREWLLM KRSSFVYIFK ATQLLIMGTI AMTVFLRTEM KSGQLEDALK FWGALFFSLI NVMFNGMQEL SMTIFRLPVF
0601: YKQRDLLFYP AWAFAMPIWV LRIPVSLIES GIWIVLTYYT IGFAPAASRF FKQFLALFGV HQMALSLFRF IAAAGRRPVV ANVLGSFTLL IVFVLGGYVV
0701: TRVDIEPWMI WGYYASPMMY GQNAIAINEF LDQRWNNPVT NSTDSVGVTL LKEKGLFSEE HWYWICIGAL FAFSLLFNVL FIAALSFFNS PGDTKSLLLE
0801: DNPDDNSRRQ LTSNNEGIDM TVRNAQAGSS SAIGAANNES RKGMVLPFQP LPLAFNHVNY YVDMPAEMKS QGEEDRLQLL RDVSGAFRPG ILTALVGVSG
0901: AGKTTLMDVL AGRKTGGYIE GSISISGYPK NQATFARVSG YCEQNDIHSP YVTVYESLLY SAWLRLASDV KDSTRKMFVE EVMDLVELHP LRHALVGLPG
1001: VDGLSTEQRK RLTIAVELVA NPSIIFMDEP TSGLDARAAA IAMRTVRNTV DTGRTVVCTI HQPSIDIFEA FDELLLMKRG GQVIYAGPLG RQSHMLVEYF
1101: ESVPGVTKIK EGYNPATWML EVSTSAVEAQ LDIDFAEVYA NSALYRRNQD LINELSTPAP GSKDLYFPTQ YSQSFITQCK ACFWKQHYSY WRNSEYNAIR
1201: FFMTIVIGVL FGVIFWSKGD QIHKQQDLIN LLGATYSAII FLGASNAFAV QPVVAVERTV FYRERAAGMY SELPNAFAQV AIETIYVAVQ TLVYALLLYS
1301: MIGFHWKVDK FFYFYYFIFM SFTYFSMYGM MVTALTPGHQ IAAIVSSFFL NFWNLFSGFL IPRPLIPIWW RWYYWASPVA WTIYGIFASQ LGDMTSEVEI
1401: TGRSPRPVNE FIKDELGLDH DFLVPVVFAH VGWAVPGTKI KDGYNPATWM LEISSSTVEA RLDIDFAEVY AYSTLYQRNQ ELINEPRTPA PGSKDLHFPT
1501: NIPNPL

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.